Protein Info for QEN71_RS35215 in Paraburkholderia sabiae LMG 24235

Annotation: flagellar hook-associated protein FlgK

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 661 signal peptide" amino acids 1 to 16 (16 residues), see Phobius details TIGR02492: flagellar hook-associated protein FlgK" amino acids 5 to 371 (367 residues), 230.7 bits, see alignment E=2.1e-72 PF21158: flgK_1st_1" amino acids 338 to 416 (79 residues), 40.8 bits, see alignment E=2.7e-14 PF21159: FlgK_2nd" amino acids 439 to 551 (113 residues), 116.1 bits, see alignment E=1.7e-37 PF06429: Flg_bbr_C" amino acids 608 to 657 (50 residues), 35 bits, see alignment 1.9e-12

Best Hits

KEGG orthology group: K02396, flagellar hook-associated protein 1 FlgK (inferred from 76% identity to bph:Bphy_2958)

Predicted SEED Role

"Flagellar hook-associated protein FlgK" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (661 amino acids)

>QEN71_RS35215 flagellar hook-associated protein FlgK (Paraburkholderia sabiae LMG 24235)
MSSNLMGIGLSGLQAAQWGLTTTGQNISNQTTPGYSVQRPVYTEASDRYTGSGYRGGGVS
TTTVQRQYSQYLATELNSAQSNAGSLDAQYRLIAQLNNMVGNPTTGIASAITRIFNGLQT
VANNASNAAMRQSALSNAQSLADQINAAGDQYDKLRASVNTQIRETVTQVNSYSAQIAQL
NAQIRALGQGQPPNQLLDQRDLAVSNLSQLVGAQVVRGDSGYNVFMANGKPLVVADRSFD
LTTVASPSDPTETAVAYAGLAGVAGATPPQIVPDGIALGGQIGGLMTFRSQTLDPAQSQL
GAIATSFAAQVNAQNALGIDLNGKRGGALFTVGSPAVLANANNTGGATLGVALADPSQPA
SSDYTLSYDGANYTLTNRQTGQVAGLAGSLPATLNGMKLSLTGGAMNRGDSFTIQPTRGA
LNGFALTTASGAAIAASSPVLVSAGRTNRGAASVTQGEVSAGYALPASATTLTYRSASPT
SPGTLSGFPVGSTVSIDGTPPTVYTITAASPNVPYNPARGASLSVTGGTINHVSLQITGR
PASGDTFTIAPNPSGGKDGRNAQAMSNLVSARSKGNGALTLTDSYANYVNDIGNQTKQVQ
MSGKAQAALVTQITSAQQSVSGVNANEEAANLLRYQKLFQANSKVIQAASQMFDTIVGIV
K