Protein Info for QEN71_RS34925 in Paraburkholderia sabiae LMG 24235

Annotation: DMT family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 313 transmembrane" amino acids 23 to 42 (20 residues), see Phobius details amino acids 52 to 73 (22 residues), see Phobius details amino acids 85 to 103 (19 residues), see Phobius details amino acids 109 to 129 (21 residues), see Phobius details amino acids 139 to 156 (18 residues), see Phobius details amino acids 168 to 187 (20 residues), see Phobius details amino acids 194 to 215 (22 residues), see Phobius details amino acids 233 to 255 (23 residues), see Phobius details amino acids 262 to 282 (21 residues), see Phobius details amino acids 288 to 306 (19 residues), see Phobius details PF00892: EamA" amino acids 28 to 154 (127 residues), 86.8 bits, see alignment E=7.5e-29 amino acids 170 to 305 (136 residues), 59 bits, see alignment E=2.8e-20

Best Hits

KEGG orthology group: None (inferred from 74% identity to bge:BC1002_4499)

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (313 amino acids)

>QEN71_RS34925 DMT family transporter (Paraburkholderia sabiae LMG 24235)
MSSQNVVTEVTINDATRSPLTLRNLGALLLLAVMWGLSIPVTKLGLQTLPPLTLTAMRFG
VAAPLLLIFVIVGRHSMPWRALPRVAALGVLGIGVGQVSQTFGVAGTSASVGTIISATIP
IFIVFFAALRLRQPVSGVQQIGVLAAFAGIALVALGHEGPTTSSQTTVGGATWVLLSALA
IAFYYVWSVELTTAYGTATVAAWSTLFGFIALIPWTARELCSISSFHVTAQGFFAAVYLG
VVVTVAGLFIWLSLLRVVPARVAASVQYLQPVVGVVIASALFGDQIGATFVLGVALVLAG
LALTMTSRRPARK