Protein Info for QEN71_RS34155 in Paraburkholderia sabiae LMG 24235

Annotation: heterodisulfide reductase-related iron-sulfur binding cluster

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 720 transmembrane" amino acids 20 to 44 (25 residues), see Phobius details amino acids 92 to 109 (18 residues), see Phobius details amino acids 129 to 151 (23 residues), see Phobius details amino acids 186 to 208 (23 residues), see Phobius details amino acids 220 to 242 (23 residues), see Phobius details amino acids 249 to 267 (19 residues), see Phobius details PF13237: Fer4_10" amino acids 314 to 395 (82 residues), 42.2 bits, see alignment E=2.6e-14 PF00037: Fer4" amino acids 315 to 333 (19 residues), 23.2 bits, see alignment (E = 1.9e-08) PF13183: Fer4_8" amino acids 316 to 397 (82 residues), 39.7 bits, see alignment E=2.4e-13 PF13187: Fer4_9" amino acids 318 to 396 (79 residues), 34.7 bits, see alignment E=5.9e-12 PF02754: CCG" amino acids 587 to 670 (84 residues), 46.4 bits, see alignment E=1.5e-15

Best Hits

KEGG orthology group: None (inferred from 96% identity to bph:Bphy_5959)

Predicted SEED Role

"Fe-S oxidoreductase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (720 amino acids)

>QEN71_RS34155 heterodisulfide reductase-related iron-sulfur binding cluster (Paraburkholderia sabiae LMG 24235)
MSSAANFDPVNVTRILFEGFPTFAIVLFYLAGVGAMAAFAWGVYIQVRKYRRGKPVAGPI
DLRKQIGAMVQVVLSHRTIARRDPAAGRAHRFIFYGFAVLFLGTATVTVDYDITARFLGF
HFWNGNFYLFFKLAMNLAGLSLVGGLIYMMVRRGWIKPPKLDYARPDRKPGDPDYDRSGY
RREDWAFLWSLVLIGITGFVLSGLRLVWLQDRAVVWDTRWWSPVAALLAEILRGAGLTAS
AAYVLRTGLWWFHGALALTFIALIPYTKVKHIFTASGSLLMRDPLAAQRLPKVDADAPRA
GYKTITDFTWKHLLNLDACTKCGRCHEACPARAVGAPLSPRDVILSLREFANDALEKNTL
PEEVKLDVHGKDIGQVFMETVWSCRTCMACVEICPVAVEHVPIIVQLRRNLVEDGQMEPQ
VQKTLQAIHKNGNSFNESKRKRAAWTKSLPFPIKDARKEPVDLLWFVGDYASFDPRNQRV
TQTFATLLHDMDVDFGLLFEGEANAGNDVRRVGEEGLYEVLATQNIATLGSSQFRRIVTT
DPHSYNTIRNEYPDFGGHFEIEHYTSLVARMLADGRLRPKRKLGYRVTFHDPCHLGRFNK
GYDAPRQIIEALGCELVDMKRSRDNSFCCGAGGGRIWMNDPVGQEKPSQNRMKEAAGIEG
LEVFVVSCPKDLTMFEDALKTSGYEGRFVVRELIELIAESLVDVDGDAPPADDVRVTADA