Protein Info for QEN71_RS32605 in Paraburkholderia sabiae LMG 24235

Annotation: TIGR00366 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 440 transmembrane" amino acids 20 to 39 (20 residues), see Phobius details amino acids 48 to 74 (27 residues), see Phobius details amino acids 99 to 124 (26 residues), see Phobius details amino acids 136 to 160 (25 residues), see Phobius details amino acids 182 to 202 (21 residues), see Phobius details amino acids 244 to 261 (18 residues), see Phobius details amino acids 267 to 286 (20 residues), see Phobius details amino acids 341 to 357 (17 residues), see Phobius details amino acids 418 to 439 (22 residues), see Phobius details PF02667: SCFA_trans" amino acids 1 to 440 (440 residues), 627.5 bits, see alignment E=7.9e-193 TIGR00366: TIGR00366 family protein" amino acids 5 to 428 (424 residues), 607.8 bits, see alignment E=7.3e-187

Best Hits

Swiss-Prot: 67% identical to ATOE_ECOLI: Putative short-chain fatty acid transporter (atoE) from Escherichia coli (strain K12)

KEGG orthology group: K02106, short-chain fatty acids transporter (inferred from 81% identity to bgl:bglu_1g31370)

MetaCyc: 67% identical to short chain fatty acid transporter (Escherichia coli K-12 substr. MG1655)
TRANS-RXN0-281

Predicted SEED Role

"Short chain fatty acids transporter" in subsystem Polyhydroxybutyrate metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (440 amino acids)

>QEN71_RS32605 TIGR00366 family protein (Paraburkholderia sabiae LMG 24235)
MIQGIARFFTQVVHRYLPDPLIFALLLTAITFALSLGLTPRTPDELVFMWGSGFWNLLAF
TMQMALILVTGHALATSGPVKNALSALGGLAKTPVQGTMLVALVSGIACAINWGFGLVLG
AMFAREVARRVRGVDYRLLVAAAYMGFLTWHGGLSGSVPLVAATKGNPMEKVIGLIPVSQ
TLFTGYNLFITAALIVMLPLLVRAMMPRADEVVSVDPALFTDEPVVERKITADSTWAERI
EESRILSILVALLIAVYLVIRFTKKGFSLDIDTVNIVFLAAGILLHKTPMAYARAIGTAA
RGTAGIMIQFPFYAGIQATMDHSGLAGVITNWFIEIANVHTFPLLTFLSSAVINFAVPSG
GGHWVVQGPFVMPAAKAIGADLGKSAMAIAYGEAWTNMAQPFWALPALAIAGLGVRDIMG
YCVTALLFSGVIFVAGLYLF