Protein Info for QEN71_RS32585 in Paraburkholderia sabiae LMG 24235

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 264 transmembrane" amino acids 12 to 38 (27 residues), see Phobius details amino acids 75 to 95 (21 residues), see Phobius details amino acids 107 to 128 (22 residues), see Phobius details amino acids 137 to 157 (21 residues), see Phobius details amino acids 192 to 215 (24 residues), see Phobius details amino acids 237 to 260 (24 residues), see Phobius details PF00528: BPD_transp_1" amino acids 84 to 262 (179 residues), 49.9 bits, see alignment E=1.6e-17

Best Hits

KEGG orthology group: K02053, putative spermidine/putrescine transport system permease protein (inferred from 93% identity to bug:BC1001_5794)

Predicted SEED Role

"polyamine ABC transporter, permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (264 amino acids)

>QEN71_RS32585 ABC transporter permease (Paraburkholderia sabiae LMG 24235)
MLLDFDRLGALRWALLAIGAAVALFLLLPIVFIVALSFGDSQWLIFPPPGWTLEWYRQLF
TDAGWIDSLLTSVKLAVIVMVLSVFIGFLASLALVRGKFRGRNAVKAFFLTPMVLPVVVL
AVALYAFFLRIGMNGTMTGFVIGHLIIALPFSVISISNSLASFDTALEDAALICGASPLE
VKLRVTLPAIRLGLFAAAIFAFLASWDEVVVSIFMASPTLQTLPVRIWATLRQDLTPVVA
AASSLLVGLTTVLMLAGAVLRRAR