Protein Info for QEN71_RS32480 in Paraburkholderia sabiae LMG 24235

Annotation: GntR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 263 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF00392: GntR" amino acids 16 to 79 (64 residues), 77.7 bits, see alignment E=6.6e-26 PF08220: HTH_DeoR" amino acids 44 to 76 (33 residues), 21.2 bits, see alignment 3e-08 PF07702: UTRA" amino acids 101 to 240 (140 residues), 133.6 bits, see alignment E=6.8e-43

Best Hits

KEGG orthology group: K03710, GntR family transcriptional regulator (inferred from 82% identity to bmu:Bmul_1299)

Predicted SEED Role

"Putative alkanesulfonate metabolism utilization regulator"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (263 amino acids)

>QEN71_RS32480 GntR family transcriptional regulator (Paraburkholderia sabiae LMG 24235)
MSKPASLLTPVTSVPLYAQIKDALRAHILDGTYAPHSQMPSEHELCAMFGVSRITVRQAL
GDLQKEGMLFKLHGKGTFVSKPKAFQNVSSLQGFAEAMSSMGYEIVNQLRSFRVVEANRN
VAARLGLEEGAPVTEIHRVRLLNREPVSLELTWLPDAIGTRLANADLVTRDIFLILENDC
GVPLGHADVAIDAILADDEIVDALRVEEGSAVLRIDRLTHDANGAPIDYEHLYFRGDAFQ
YRLRIDREKAGKSTKNKATRKTR