Protein Info for QEN71_RS32460 in Paraburkholderia sabiae LMG 24235

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 281 transmembrane" amino acids 32 to 58 (27 residues), see Phobius details amino acids 86 to 109 (24 residues), see Phobius details amino acids 121 to 141 (21 residues), see Phobius details amino acids 147 to 167 (21 residues), see Phobius details amino acids 187 to 232 (46 residues), see Phobius details amino acids 245 to 267 (23 residues), see Phobius details PF00528: BPD_transp_1" amino acids 101 to 275 (175 residues), 78.2 bits, see alignment E=3.4e-26

Best Hits

KEGG orthology group: K02050, sulfonate/nitrate/taurine transport system permease protein (inferred from 81% identity to bcn:Bcen_6102)

Predicted SEED Role

"Alkanesulfonates transport system permease protein" in subsystem Alkanesulfonate assimilation or Alkanesulfonates Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (281 amino acids)

>QEN71_RS32460 ABC transporter permease (Paraburkholderia sabiae LMG 24235)
MAATFDLHDRHTSRHRRAPFFAPSTKRRAWRAASLAACVALWQLAVHFRLSAGIITFANV
PAPSDALPALWSLLHSPKLPMHLAASIWRVLAGFCTAAVVGVGLGLAIGRYRAVEDTVLP
ALEVLRPIPAVAWIPLAILMFPSSELSMMFITFIGALFPILLNTVHGVEAVDPRLVATAR
SLGTRPLALYTEVVLPGAAPAIFTGLAIGMGTAWFCLVTAEMIAGQYGIGYFTWESYTLQ
NYPDIVVGMALIGALGMGSSVLVKRLGVALTPWYRLQETRR