Protein Info for QEN71_RS32430 in Paraburkholderia sabiae LMG 24235

Annotation: ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 370 transmembrane" amino acids 12 to 29 (18 residues), see Phobius details amino acids 35 to 54 (20 residues), see Phobius details amino acids 60 to 77 (18 residues), see Phobius details amino acids 85 to 105 (21 residues), see Phobius details PF00512: HisKA" amino acids 144 to 210 (67 residues), 33.3 bits, see alignment E=4.2e-12 PF02518: HATPase_c" amino acids 255 to 364 (110 residues), 77.1 bits, see alignment E=1.4e-25

Best Hits

Predicted SEED Role

"Signal transduction histidine kinase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (370 amino acids)

>QEN71_RS32430 ATP-binding protein (Paraburkholderia sabiae LMG 24235)
MERVSFLGKQNPTLTLTLAGALALFVFVVDSFGHYATAIMVLYSIVVMLVATVLSRRGTL
IVAIVCIWATVAGYLMGHLDEDSFSALARATVACLSIVATTALTLRIQADSARLAQQVRE
LHETHEALNRSTTELAHATRVTMLGELAASIAHEVSQPLAAITTHGEAGLRWLRRETPNL
DEACHAFEAMASNARRSSEIIRRIRALASKSEPTFAPLGINSLVVETIDLLDREVKKYGA
IVRMDLAPGELVVNGDRVQLQQVLINLAVNGLQAMSSINDRPRELKVRTRVEDGERVFVI
FEDSGTGIAPEVAANLFSAFYTTKAEGMGLGLSICRSIVEGHGGSISCATPSTRGATMQI
ELPVAVHADA