Protein Info for QEN71_RS32320 in Paraburkholderia sabiae LMG 24235

Annotation: OmpW family outer membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 243 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF13505: OMP_b-brl" amino acids 10 to 243 (234 residues), 33.7 bits, see alignment E=4.2e-12 PF03922: OmpW" amino acids 48 to 243 (196 residues), 108.1 bits, see alignment E=5.5e-35

Best Hits

KEGG orthology group: None (inferred from 72% identity to bgf:BC1003_5358)

Predicted SEED Role

"Outer membrane protein W precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (243 amino acids)

>QEN71_RS32320 OmpW family outer membrane protein (Paraburkholderia sabiae LMG 24235)
MRPYRAIAMAAALLTGTAAHAQSAGSFVANVGWFHLAPQVSSQPFSINALGTSTTASGSG
ATIDGADTVGFTATYFVTDHIAVEGVFGVPPKFTLSGTGTLAGLGELGKAYEWSPTLLLK
YYFNDAQSHFRPYLGAGAAYVWYSGVKLSSAMSSGAFLYSSTYGTALEGQTTAKLSSSFA
PVINAGFAYNFDKHWSAGVSLSYMWLSTRATLTTHSTAAGTVTSTSKIHVNPIVSFVSVG
YRF