Protein Info for QEN71_RS31735 in Paraburkholderia sabiae LMG 24235

Annotation: OmpA family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 304 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF00691: OmpA" amino acids 202 to 296 (95 residues), 89.1 bits, see alignment E=1e-29

Best Hits

KEGG orthology group: K02557, chemotaxis protein MotB K03286, OmpA-OmpF porin, OOP family (inferred from 79% identity to bug:BC1001_5645)

Predicted SEED Role

"Outer membrane protein assembly factor YaeT precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (304 amino acids)

>QEN71_RS31735 OmpA family protein (Paraburkholderia sabiae LMG 24235)
MRLKLSLLASALLAASFSATAFADNAGPANVTPVDNSGNKIRTTVLPAPASTPNTSSPAA
TGAVTSAPPAANATPGQVVVGGKLPDEATKAAVLARLRDTYGAANVVDQIEIGDVATPPN
WSANVQKLIGPELKQISKGQLKIDGTSIEVKGEVRNEAQRQQLASDMANSLNPTYTIKNA
LRVSASEQGLLDQTLANRTIEFETGSATLTPQGRTILDQMASVLTKMTTKQVAIIGHTDT
SGSRTSNIALSQARADAVKGYLVAKGISPQQLSTLGVGPDQPIATNDTADGRARNRRIEF
RAGS