Protein Info for QEN71_RS31725 in Paraburkholderia sabiae LMG 24235

Annotation: type VI secretion system ATPase TssH

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 884 TIGR03345: type VI secretion ATPase, ClpV1 family" amino acids 12 to 870 (859 residues), 1308.9 bits, see alignment E=0 PF02861: Clp_N" amino acids 23 to 74 (52 residues), 25.7 bits, see alignment 4.2e-09 PF00004: AAA" amino acids 229 to 359 (131 residues), 38 bits, see alignment E=8.7e-13 amino acids 619 to 735 (117 residues), 28.4 bits, see alignment E=8.2e-10 PF17871: AAA_lid_9" amino acids 369 to 470 (102 residues), 103 bits, see alignment E=3.2e-33 PF07724: AAA_2" amino acids 614 to 782 (169 residues), 193.4 bits, see alignment E=1.2e-60 PF07728: AAA_5" amino acids 619 to 739 (121 residues), 38.3 bits, see alignment E=5.3e-13 PF10431: ClpB_D2-small" amino acids 789 to 859 (71 residues), 44.6 bits, see alignment E=4.8e-15

Best Hits

KEGG orthology group: K11907, type VI secretion system protein VasG (inferred from 84% identity to bpy:Bphyt_4919)

Predicted SEED Role

"ClpB protein" in subsystem Protein chaperones or Proteolysis in bacteria, ATP-dependent

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (884 amino acids)

>QEN71_RS31725 type VI secretion system ATPase TssH (Paraburkholderia sabiae LMG 24235)
MSTPLKTLIAKLNPTCRQATEQAASRCLSRGHYEVDLEHLFGALLDEAATDVPLVLRASA
IDINALRGDLERELERLKTGNTRTPVFSVHLIALFEQAWLIASLDSQIARIRSGHLLLAL
LSAPDLAQFAQRMSPLFAQVRVTDLKHRFDELTQGSRESEVATASTESAEFADENARVKA
PSKTPALDTYTTNLTQRARDGHIDPVIGREAEIRQTIDILMRRRQNNPIMTGEAGVGKTA
VVEGLALRIAADDVPPPLRGVALHVLDMGLLQAGASVKGEFENRLKSVIDEVKKSAHPII
LFIDEAHTIIGAGGTAGQNDAANLLKPALARGELRTIAATTWSEYKKYFEKDAALARRFQ
VVKIEEPSEALASAMLRGMAAMMEKHFNVRILDQAITEAVRLSHRYISGRQLPDKAISVL
DTACAKVALAQSATPAAIDDTSKRIERIDAEVAALEREAASGATHDERLAELRGQRASEV
ERLGHDQARYEKERAIVGEIVALREQLDASRDGKSNADDAPNVRETLESRVAELAELQKT
TPMVPLQVDAHVVAEIVASWTGIPLGRMVKDELRTVLNLQPLLTARVIGQDHALEAIAQR
VRTASANLEDPNKPRGVFMFVGPSGVGKTETALALADILYGGERKMITINMSEYQEAHSV
SGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKGAMDDAE
GREIDFRNTLIILTSNVGSSVVMQACLNKSAEELPDAEALSEMLRSQLYKAFKPAFLGRM
KVVPYYPISDDVLAEIIELKLERIQRRIEANHKAEFEWDESLVDAVLARCTEVDSGARNV
DHILNGTLLPEIAQQVLERIADGVPIKRIGARATEAGEFEYTVV