Protein Info for QEN71_RS31055 in Paraburkholderia sabiae LMG 24235

Annotation: 2-methylaconitate cis-trans isomerase PrpF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 394 transmembrane" amino acids 317 to 336 (20 residues), see Phobius details TIGR02334: probable AcnD-accessory protein PrpF" amino acids 5 to 393 (389 residues), 758.6 bits, see alignment E=5.9e-233 PF04303: PrpF" amino acids 6 to 392 (387 residues), 643.1 bits, see alignment E=7.1e-198

Best Hits

Swiss-Prot: 85% identical to PRPF_CUPNE: 2-methyl-aconitate isomerase from Cupriavidus necator

KEGG orthology group: K09788, hypothetical protein (inferred from 95% identity to bph:Bphy_6709)

Predicted SEED Role

"2-methylaconitate isomerase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (394 amino acids)

>QEN71_RS31055 2-methylaconitate cis-trans isomerase PrpF (Paraburkholderia sabiae LMG 24235)
MAHAPQIKIPATYMRGGTSKGVFFRLKDLPEAAQVPGAARDALLLRVIGSPDPYGKQIDG
MGGATSSTSKTVIVAKSSRPDHDVDYLFGQVSIDKPFVDWSGNCGNLSAAVGPFAISGGL
VDPERVPDNGVAIVRIWQANIGKTIIAHVPMTNGAVQETGDFELDGVTFPAAEVQLEFMD
PAAEEEGAGGSMFPTGNLVDDLEVPGVGTLKATMINAGIPTIFVNADAIGYTGTELQDAI
NGDDAALKKFETIRAHGAMRMGLIKHLDEIATRQHTPKIAFVAAPAGYVASSGKAVSGGD
VDLLVRAMSMGKLHHAMMGTAAVAIGTAAAIPGTLVNLAAGGGEREAVRFGHPSGTLRVG
AEAALVDGEWVVRKAVMSRSARVLMEGWIRVPGV