Protein Info for QEN71_RS30535 in Paraburkholderia sabiae LMG 24235

Annotation: AMP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 556 transmembrane" amino acids 86 to 104 (19 residues), see Phobius details amino acids 251 to 274 (24 residues), see Phobius details PF00501: AMP-binding" amino acids 31 to 410 (380 residues), 261.6 bits, see alignment E=1.1e-81 PF13193: AMP-binding_C" amino acids 461 to 529 (69 residues), 58.7 bits, see alignment E=8.8e-20

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (556 amino acids)

>QEN71_RS30535 AMP-binding protein (Paraburkholderia sabiae LMG 24235)
MREDIAHADWEKWVECFGLAQPVTLPAVLASRAAATPDAEALVIDGQRIDYRTLHERVQS
AAARMIAAGVEHGEHVGILMGNSVDWVVLFYAAASIGAVTVPVNTRFKLDELNYCLKQGD
VRVLFYVDTFLNIDYTQLLRDVEPAFDAKLPGDVLPLLRRAVLMGETERKVPAGVERFDA
LADTPETRAEAAARAQRVTPDDILLIQYTSGTTSFPKGVLLRHRNMLMNAAASALRIGVQ
PDDRYFSVRPFFHVAGTTMSLLVALVSGACLLSVPSFDVARVLTILDEERCTLTSGNDTI
FLMMMGHPEFKRERIHLRGGWAAAGPEIMQKIHDVMGVKYMVGAYGQSEASPNVVLNDWR
DPLELRVAGWAAPHPGLDIRTVSTETGDVQPADMPGEIQVRGWSVMKGYYNKPQETAKAF
SDDGWLRTGDLGVIDGEGRMRMLGRLKDVFRVGGENVAPAEVEETLFAHPAVQLAQVVGV
PDARLGEVAAAFVVLRAGTQASSEELIDWCKSRCANFKVPRYLRLVQSFDDIGMTGSSKV
QKNKLRDYAIREFGLA