Protein Info for QEN71_RS30530 in Paraburkholderia sabiae LMG 24235

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 445 transmembrane" amino acids 31 to 52 (22 residues), see Phobius details amino acids 65 to 88 (24 residues), see Phobius details amino acids 96 to 115 (20 residues), see Phobius details amino acids 121 to 144 (24 residues), see Phobius details amino acids 154 to 177 (24 residues), see Phobius details amino acids 189 to 209 (21 residues), see Phobius details amino acids 257 to 281 (25 residues), see Phobius details amino acids 293 to 311 (19 residues), see Phobius details amino acids 323 to 342 (20 residues), see Phobius details amino acids 348 to 368 (21 residues), see Phobius details amino acids 380 to 402 (23 residues), see Phobius details amino acids 414 to 438 (25 residues), see Phobius details PF07690: MFS_1" amino acids 34 to 399 (366 residues), 148.7 bits, see alignment E=2.1e-47 PF00083: Sugar_tr" amino acids 62 to 430 (369 residues), 27.1 bits, see alignment E=2e-10

Best Hits

KEGG orthology group: None (inferred from 47% identity to rpc:RPC_1075)

Predicted SEED Role

"Nitrate/nitrite transporter" in subsystem Nitrate and nitrite ammonification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (445 amino acids)

>QEN71_RS30530 MFS transporter (Paraburkholderia sabiae LMG 24235)
MTTCASDAVGLLRPNEAVSETTYRKISRRILPLLFLCYIINYIDRVNIGIAQIQFKADLH
FSDLVYGIGAGLFFVGFLLFEVPSNLLLAKMGARKTLLRIMVLWGAVSSATMFVRTPAEF
YLARMLLGVAEAGFFPGIILYLSYWFPAARRARVTALSFIAIPVATMIGAPISGWIMRSF
HSVNGLAGWQWMFLLEGLPAILLGIVVYFRLEDRPESAAWLTSEEKAGLVAALDAERRQR
ATHGHGGMLSALRDWRVFVAGMVSFCAYILASTIAFFAPMVIQSSGVHDPFRVGLYAAIP
PIAGIVMMVIVSRHSDRTRERRWHAAIPLMLAAASLIALPFARGDLALAVALLAIATSGH
LSSLSVFWTIPSTYLASSSAAAGIALVSSIGSLGGLVGPSMIGYVKSVWGSLTLGIQLAG
CVILLGGIGLLIGIPARLLAVDKTS