Protein Info for QEN71_RS29725 in Paraburkholderia sabiae LMG 24235

Annotation: aldolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 256 PF00596: Aldolase_II" amino acids 30 to 206 (177 residues), 126.7 bits, see alignment E=5.2e-41

Best Hits

KEGG orthology group: None (inferred from 67% identity to axy:AXYL_00172)

Predicted SEED Role

"Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (256 amino acids)

>QEN71_RS29725 aldolase (Paraburkholderia sabiae LMG 24235)
MSEQDPNKVNDGLVDEMARKLDQGAWDSRQKIALTCRMLAHEGHSETLAGQITVRESDGT
FLTTAMAYGFDEATRSNVIRIDDEMNVIEGRGMANPAIRFHLWIYRRRPDVNCIVHTHPP
YVNALSMTGRPLEVAHMDATPFHDDCAFLREWPGLPIGDSEGEIISSALGNKRVILLANH
GFLAATSSLEESAYLSVLIERAARGQILAQSLGELQPIDPERAKESHDFLLLPSIVKSSF
ALFARRVVKREPDVLF