Protein Info for QEN71_RS29550 in Paraburkholderia sabiae LMG 24235

Annotation: type II secretion system minor pseudopilin GspK

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 367 signal peptide" amino acids 1 to 41 (41 residues), see Phobius details PF21687: T2SSK_1st" amino acids 127 to 260 (134 residues), 42.9 bits, see alignment E=1.1e-14 PF03934: T2SSK" amino acids 264 to 326 (63 residues), 57.4 bits, see alignment E=2.3e-19

Best Hits

KEGG orthology group: K02460, general secretion pathway protein K (inferred from 92% identity to bph:Bphy_3078)

Predicted SEED Role

"General secretion pathway protein K"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (367 amino acids)

>QEN71_RS29550 type II secretion system minor pseudopilin GspK (Paraburkholderia sabiae LMG 24235)
MRFRPARSRSTRSAQRGAAIISALLVVALSAILVSGMLWRQQVQIRRIENQRLLAQAHWV
SRGALDWTRLILRSEGDTSAGITYLGGVWGVPIARTRLSDFLGQIGEVRAQEGAATYISG
SIEDAQAKFNLRNLVSTAVPGALTLNLQQIEAFQRLLQLLGINGQLAKNTALQLRAGLRQ
SATRFQTAVNPGTPVDPTQQVQGGAAGGGNYTNQPGIDDTEGNAPVAPLQMTGVDSLLDV
PGFTPETVARLRPFVTVLPTATPVNMNTAPAEVVAAVVPGMSLSSAQAFVARRETVFFHN
VGDVQLALRGSGVQQLVFDPNQLDVNTSYFLVHGRVEHERAEVDRTTLVYRDALTHTTRI
VWGRDQL