Protein Info for QEN71_RS28750 in Paraburkholderia sabiae LMG 24235

Annotation: OmpA family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 590 transmembrane" amino acids 244 to 266 (23 residues), see Phobius details PF06078: DUF937" amino acids 9 to 140 (132 residues), 52.1 bits, see alignment E=9.8e-18 PF00691: OmpA" amino acids 480 to 578 (99 residues), 65.7 bits, see alignment E=4.1e-22

Best Hits

KEGG orthology group: None (inferred from 83% identity to bph:Bphy_2923)

Predicted SEED Role

"outer membrane protein OmpA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (590 amino acids)

>QEN71_RS28750 OmpA family protein (Paraburkholderia sabiae LMG 24235)
MSVNVIQLVRSALPDAVVRQLSNCLGLPPEATAKVMDVTAPALVAGLLHKCATLDGARAL
FATVLGQEVSADIAEQLPRIFSSTTGVTQLSSTGRQLLEHLFERRIDGLSDTVSMQTGVP
AHATHAISGIAGGVMMGVLKRHVLDHQGNIGQLPTLLGQQLPHIAPFLNDGLTMVLGLGG
AAAFAQTVGSQVRAVSSHFDQPVAAPAPVRGPAEPTLSTNASAAVQPAREVREVRHVGLK
AKHWLGVTALSALIGALAAMLTWIALSYCPAATGFLSRNVVAAEPVAADASAAQADTQPV
PQPAHDDSASTSGPVQTDAAPAAAKDSQLIVSVDKNGKPTITATVQNVAEKSQLLNALTK
KFGAGNFNADITLDDSRKAADWLAHLDALLPLLATPGAEMKIDGTQVELSGAAADAKSGW
LDRLKSLFGASYQVSAFNPAQAVANAAQSFRNAAKSLLAPGASCASADLVRTLNLQVVNF
ASRDARVPQSAFDDLNQSAQLLQSCAKSGHAPKLEVAGYSDNVGGESANLELSKERAEAV
RAFLVKAGVPADALVAHGYGNVRPVASNATESGRFANRRIEFTDAQAQPQ