Protein Info for QEN71_RS28505 in Paraburkholderia sabiae LMG 24235

Annotation: LysE family translocator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 218 transmembrane" amino acids 6 to 27 (22 residues), see Phobius details amino acids 41 to 65 (25 residues), see Phobius details amino acids 71 to 88 (18 residues), see Phobius details amino acids 128 to 149 (22 residues), see Phobius details amino acids 157 to 178 (22 residues), see Phobius details amino acids 197 to 216 (20 residues), see Phobius details PF01810: LysE" amino acids 16 to 214 (199 residues), 126.9 bits, see alignment E=3.6e-41

Best Hits

KEGG orthology group: None (inferred from 88% identity to bph:Bphy_2876)

Predicted SEED Role

"Homoserine/homoserine lactone efflux protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (218 amino acids)

>QEN71_RS28505 LysE family translocator (Paraburkholderia sabiae LMG 24235)
MSLHTWWLYLATIFVVCAIPGPNMLLMMTHGARHGMRQTTATMAGCLMSLMLMLAVSVAG
LGVLLQAWPTMFNALRLLGAAYLIWLGVKAWRAPVSEAAAAQVEASPEATGGIGGKRAPS
RGALMRNGFLVGSSNPKAILFSAALLPQFIDASRPTLPQFAILVATTAVMEVSWYVVYAA
CGTQIGAKLKSSSVAKAFNRLTGGVFVGFGAMMALVRH