Protein Info for QEN71_RS28020 in Paraburkholderia sabiae LMG 24235

Annotation: OmpW family outer membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 240 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF13505: OMP_b-brl" amino acids 9 to 212 (204 residues), 44.3 bits, see alignment E=2.4e-15 PF03922: OmpW" amino acids 61 to 240 (180 residues), 107.1 bits, see alignment E=1.1e-34

Best Hits

KEGG orthology group: K07275, outer membrane protein (inferred from 89% identity to bph:Bphy_2790)

Predicted SEED Role

"Outer membrane protein W precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (240 amino acids)

>QEN71_RS28020 OmpW family outer membrane protein (Paraburkholderia sabiae LMG 24235)
MKLKQALGVAALACITTTAHAQSAGSMFITTGWFHLAPQSSSQPLKETNVNGTPVNITVP
NTGAELGSGDTIGFTAGYFVTDHIATEFVIGVPPQFDLKGTGSFEQYGKLGSAKQWSPTL
LFKYYFNQPQAKFRPYLGLGVSRVSFTDEHITNGAFEANVLHGPTTVTTDSSWEPVFNAG
FTYAFTDHWFAGFSISYLPLSTTAKLNTTANTPIGPVNVQSETKIRLNPIVTYVNLGYRF