Protein Info for QEN71_RS27080 in Paraburkholderia sabiae LMG 24235

Annotation: SDR family oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 266 PF08659: KR" amino acids 26 to 180 (155 residues), 33.5 bits, see alignment E=5.9e-12 PF00106: adh_short" amino acids 26 to 215 (190 residues), 159.3 bits, see alignment E=1.2e-50 PF13561: adh_short_C2" amino acids 33 to 265 (233 residues), 177.3 bits, see alignment E=6e-56

Best Hits

Swiss-Prot: 51% identical to SQD_PSEPU: Sulfoquinovose 1-dehydrogenase (PpSQ1_00405) from Pseudomonas putida

KEGG orthology group: None (inferred from 95% identity to bph:Bphy_2612)

Predicted SEED Role

"Putative oxidoreductase in arabinose utilization cluster" in subsystem L-Arabinose utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (266 amino acids)

>QEN71_RS27080 SDR family oxidoreductase (Paraburkholderia sabiae LMG 24235)
MSSPANATAREEQSQYARYPSLVDRTVLITGGATGIGASFVEHFVAQGARVAFFDIDETA
GDALADQLGDSRHKPLFLYADLTDVDALKKAIADVRAALGPIDVLVNNAANDKRHKIEDV
TPESFDAGIAVNIRHQFFAAQAVAEDMKAARRGSIINLGSISWMLKNGGYPVYTLSKSAV
QGLTRGLARDLGHFGIRVNSLVPGWVMTDKQKRLWLDDAGRLAIKQGQCIDEELLPDDLA
RMALFLAADDSRMITAQDIIVDGGWA