Protein Info for QEN71_RS26145 in Paraburkholderia sabiae LMG 24235

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 385 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details transmembrane" amino acids 41 to 63 (23 residues), see Phobius details amino acids 71 to 93 (23 residues), see Phobius details amino acids 99 to 121 (23 residues), see Phobius details amino acids 128 to 148 (21 residues), see Phobius details amino acids 159 to 179 (21 residues), see Phobius details amino acids 201 to 223 (23 residues), see Phobius details amino acids 235 to 255 (21 residues), see Phobius details amino acids 266 to 285 (20 residues), see Phobius details amino acids 291 to 311 (21 residues), see Phobius details amino acids 331 to 350 (20 residues), see Phobius details amino acids 356 to 375 (20 residues), see Phobius details PF07690: MFS_1" amino acids 8 to 339 (332 residues), 148.3 bits, see alignment E=2.8e-47 PF00083: Sugar_tr" amino acids 40 to 177 (138 residues), 33.3 bits, see alignment E=2.6e-12

Best Hits

Swiss-Prot: 42% identical to YTBD_BACSU: Uncharacterized MFS-type transporter YtbD (ytbD) from Bacillus subtilis (strain 168)

KEGG orthology group: K08156, MFS transporter, DHA1 family, arabinose polymer transporter (inferred from 96% identity to bph:Bphy_2432)

Predicted SEED Role

"Arabinose efflux permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (385 amino acids)

>QEN71_RS26145 MFS transporter (Paraburkholderia sabiae LMG 24235)
MPLPLLALAVAAFGIGTTEFVIMGLLPDVARDLSVSIPAAGMLVSAYALGVTIGAPIVAI
AVANMPRKKALMSLIGIFILGNLLCAIAPGYAVLMAARIVTAFCHGAFFGIGSVVAAGLV
APNRRAQAIALMFTGLTLANVLGVPLGTALGQAVGWRATFWAVTGIGVIAAVALALCLPS
KIEMQKASLVHEFTVLKNPQVLMVLGTSVLASASLFSTFTYITPILEDVTGFTPHAVTMV
LLLFGLGLTVGSTLGGKLADWRPVQSLMSFLLAIVAILSIFAMTMHSEIPAMITIFLWGV
LAFAIVPPLQMLIVDRASSAPNLASTLNQGAFNLGNATGAWLGGMAIGAGAPLTSLPWVG
VATAVGAVALTWWSVSLDRRLPVAG