Protein Info for QEN71_RS25085 in Paraburkholderia sabiae LMG 24235

Annotation: tetratricopeptide repeat protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 556 PF13432: TPR_16" amino acids 58 to 99 (42 residues), 18.6 bits, see alignment 1.6e-06 amino acids 117 to 170 (54 residues), 29.8 bits, see alignment 4.8e-10 amino acids 177 to 239 (63 residues), 35.2 bits, see alignment E=9.9e-12 amino acids 221 to 260 (40 residues), 31.6 bits, see alignment 1.4e-10 PF07721: TPR_4" amino acids 71 to 92 (22 residues), 17.5 bits, see alignment (E = 3.7e-06) amino acids 209 to 232 (24 residues), 16.7 bits, see alignment (E = 6.7e-06) amino acids 243 to 259 (17 residues), 11.7 bits, see alignment (E = 0.00027) PF14559: TPR_19" amino acids 120 to 176 (57 residues), 26.5 bits, see alignment 5e-09 amino acids 149 to 213 (65 residues), 28.6 bits, see alignment E=1.1e-09 amino acids 221 to 259 (39 residues), 29.1 bits, see alignment 7.8e-10 PF13424: TPR_12" amino acids 138 to 203 (66 residues), 32.8 bits, see alignment E=5e-11 amino acids 174 to 238 (65 residues), 41.5 bits, see alignment E=9.2e-14 PF13181: TPR_8" amino acids 142 to 170 (29 residues), 13.9 bits, see alignment (E = 3.8e-05) amino acids 174 to 206 (33 residues), 14.5 bits, see alignment (E = 2.5e-05) amino acids 208 to 239 (32 residues), 20.7 bits, see alignment (E = 2.6e-07) PF13174: TPR_6" amino acids 208 to 239 (32 residues), 13.1 bits, see alignment (E = 9.8e-05) PF07719: TPR_2" amino acids 208 to 239 (32 residues), 25.9 bits, see alignment (E = 5.3e-09) PF13374: TPR_10" amino acids 208 to 236 (29 residues), 23.9 bits, see alignment (E = 2.5e-08) PF13176: TPR_7" amino acids 209 to 242 (34 residues), 27.5 bits, see alignment (E = 1.6e-09) PF13414: TPR_11" amino acids 220 to 255 (36 residues), 30.9 bits, see alignment 1.3e-10

Best Hits

KEGG orthology group: None (inferred from 84% identity to bph:Bphy_2201)

Predicted SEED Role

"FOG: TPR repeat"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (556 amino acids)

>QEN71_RS25085 tetratricopeptide repeat protein (Paraburkholderia sabiae LMG 24235)
MPPEPANFQAAFEAHLAGRLDEAERGYRAVLEHDPHHADALHLLGVVLSARGVWIEGEAL
LHRAIALRDDAHFHANLAELLLRRGRLQEAEASGRRAIDVDPRCGLAHFYLAETLTRTAR
PREAEAAYRRSIELEPKMLAVRNNLGNLLLHENRFDDAIATFGEALDIDGTYIHALYNLG
MALLRSVRPAEAEMAFRRALAVQPDHRDALHNLGTALKLTGRYDEAEAVYRQTLALAPDF
ADAHWNLAVLLLTQGRLAEGWPHAEARYAPQRAPKDIPPPAGTPQWQGESLDGKTLVLWH
EQGYGDCVQFARYAPLLKALGVRHLTLMCPAPLKPLMETLDSIDAVTTHSGQIGQHDFWA
YPLSLPLRFGTTLDTIPAALPYLRALPERVERWRVHLSKAPGLKIGLVWKGFAGNQHDAT
RSLPDLTPLAPLWTVAGVTFFSLQKGQGEDEAAAPPDGQPIVSLGSGIEDFADTAAIIAQ
LDLLIAVDTAAAHVAGALGKPCWLMLPHDWTDWRWLLERDDTPWYPGVMRLFRQSAADDW
REVAERMADALRHLEK