Protein Info for QEN71_RS24830 in Paraburkholderia sabiae LMG 24235

Annotation: ABC transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 584 transmembrane" amino acids 25 to 44 (20 residues), see Phobius details amino acids 73 to 95 (23 residues), see Phobius details amino acids 106 to 131 (26 residues), see Phobius details amino acids 137 to 159 (23 residues), see Phobius details amino acids 192 to 233 (42 residues), see Phobius details amino acids 243 to 264 (22 residues), see Phobius details amino acids 298 to 318 (21 residues), see Phobius details amino acids 342 to 363 (22 residues), see Phobius details amino acids 375 to 405 (31 residues), see Phobius details amino acids 418 to 440 (23 residues), see Phobius details amino acids 447 to 472 (26 residues), see Phobius details amino acids 493 to 514 (22 residues), see Phobius details amino acids 551 to 570 (20 residues), see Phobius details PF00528: BPD_transp_1" amino acids 89 to 257 (169 residues), 56.9 bits, see alignment E=1.2e-19 amino acids 398 to 566 (169 residues), 52.3 bits, see alignment E=3.1e-18

Best Hits

KEGG orthology group: K02050, sulfonate/nitrate/taurine transport system permease protein (inferred from 96% identity to bph:Bphy_2156)

Predicted SEED Role

"ABC-type anion transport system, duplicated permease component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (584 amino acids)

>QEN71_RS24830 ABC transporter permease subunit (Paraburkholderia sabiae LMG 24235)
MDFFSFTLNRTANASAWRVLPNRWDFIAFPLIICLIAMAVVGFHETMAPISTLQSAPISL
DPANLPEYALRTTLRMLAAMVASLVFTLVYGTLAAKSRRAGQVLVPILDILQSVPVLGYI
SFTVTFFLALFPSRVLGAELAAIFAIFTSQAWNMTFSFYQSLRTVPRDLDEVSKGFHLTS
WQRFWKLEVPFSMPGLIWNMMMSMSGGWFFVVASEAITVGNHTITLPGVGAYLAQAIADK
NLHAIGWVILTMTVVILAYDQFLFRPLVAWTDKFRMENTSSGDAPESWLLDLIRRTRLIH
RLLVPIGWMFAKAARVPIRWPSMSAVKFAKPVDHKPSKTGDIVWAVIVVLVTAFVVYRVI
AYVRTGVTLDEVGHVFVLGLFTLLRVTLLIALASVVWLPVGVLIGLRPSLAEKVQPVAQF
LAAFPANLLFPVFVIVIVKFDLNPDVWLSPLIVLGTQWYILFNVIAGASAYPNDYKEAAK
NFRIRGWQWWRQAMLPGVFPYYVTGAITASGGAWNASIVAEAVQWGNTKLAAHGLGAYIA
EYTAAGDYPKIILGIAVMSLFVSLFNRVLWRPLYAYAESRLRLD