Protein Info for QEN71_RS24520 in Paraburkholderia sabiae LMG 24235

Annotation: DNA translocase FtsK

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1286 transmembrane" amino acids 6 to 23 (18 residues), see Phobius details amino acids 42 to 63 (22 residues), see Phobius details amino acids 80 to 103 (24 residues), see Phobius details signal peptide" amino acids 24 to 24 (1 residues), see Phobius details PF17854: FtsK_alpha" amino acids 797 to 897 (101 residues), 96.9 bits, see alignment 1.1e-31 PF01580: FtsK_SpoIIIE" amino acids 905 to 1114 (210 residues), 259.1 bits, see alignment E=4.8e-81 PF09397: FtsK_gamma" amino acids 1221 to 1281 (61 residues), 87.3 bits, see alignment 7e-29

Best Hits

Predicted SEED Role

"Cell division protein FtsK" in subsystem Bacterial Cell Division or Bacterial Cytoskeleton or Bacterial RNA-metabolizing Zn-dependent hydrolases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1286 amino acids)

>QEN71_RS24520 DNA translocase FtsK (Paraburkholderia sabiae LMG 24235)
MQTVVFGWFGASAVWFLPLLWRLVKSALPGGAGLRGPGTIRLWLGFLCVLIASCTLEASL
VNVQGVDGLGHALSTGFTHLLGRVATPLVMLGLFLISLPWLIGFRWTSFVGWANDAFGLG
FARRSRDEEPRSHARAAAVESTPSHSSAPINTMAPKTNGRYARPTVWRPPSTTATRGAAA
AGAVGMAGEAMGMSGSAGVTRHAAAGAPSGVAGSQTSNRSTSRPTSWTPSEPVAPVGWLA
PDAARAHSRESAPVTMEAARVASTPPTVFGSTAALQSSKAAAAQAAARSVSVNPAVTSAR
SASLRSAGLSQSRQAMSSGSTMHTAHTAQTRLGTASSGSPAMRPNTPNLKVPAYTRANQP
AQPAAPAASVQETLRSIEENAARWTTLAGASLARRTASDPAKVAGVRNESVSDMAAMGDA
PVVAASASVAGVSGAPAVAGAAAVAAVDQAVSALEAAIAGAHEAAATPASDAPLQTPVAT
VALADPEPVAALLPSNVTPIAEAAALASTVMAVEPAHEDNDTDVALVDEPEAPVVANTSE
TQAEEVTAHVEVQAQTTAPDHDAESTESDVTDVIPAAVVAPSIAAPTEPQTSTSTAQAET
PSVEFAPAGSTATESQAATTQQPDEDAASQPDSLAAVIADETTASTADEPAPVAPWDAIT
QSVTQLRAASASAPVMQPNQAPVSNAPAYSVVPLHTDDESSDAEETSTDNEPEAPTNIVR
FPFAAAPVAPASEENLADSPAVHEQNDAQEPVPQPDEQDVPDAQQDTTPPAAPRPAVRGH
SGPAFEFHAPSASHIELPTLDLLAPASSDAEPVSEERLAETSALIEQRLQEFKVPVTVVG
ASAGPVITRFEVEPALGVRGSQIVGLMKDLSRGLGLTSIRVVETIPGKTCMGLELPNAKR
QTIRLSEILQADVYQHSKSNLTLAMGKDITGHPVVTDLAKAPHMLVAGTTGSGKSVAINA
MIVSLLYKATPEEVRMIMIDPKMLELSVYEGIPHLLAPVVTDMKLAANALNWCVGEMEKR
YRLMSAVGVRNLQGFNQKIRDAAAKEKKIGNPFSLTPDAPEPLSPLPLIVVVIDELADLM
MVAGKKIEELIARLAQKARAAGIHLILATQRPSVDVITGLIKANIPTRVAFQVSSKIDSR
TILDQMGAESLLGQGDMLFLPPGTGYPQRVHGAFVADEEVHRIVEHLKQFGEPEYVEGIL
DGPATDGGATQDLFGETPDAEADPLYDEAVAFVVRTRRASISAVQRQLRIGYNRAARLVE
QMETAGLVSAMGINGSREVLAPGPAE