Protein Info for QEN71_RS23775 in Paraburkholderia sabiae LMG 24235

Annotation: TIGR00645 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 transmembrane" amino acids 26 to 48 (23 residues), see Phobius details amino acids 66 to 91 (26 residues), see Phobius details amino acids 117 to 137 (21 residues), see Phobius details amino acids 148 to 169 (22 residues), see Phobius details TIGR00645: TIGR00645 family protein" amino acids 16 to 180 (165 residues), 203.4 bits, see alignment E=1.5e-64 PF03350: UPF0114" amino acids 22 to 138 (117 residues), 123.4 bits, see alignment E=3e-40

Best Hits

Swiss-Prot: 58% identical to Y1258_PASMU: UPF0114 protein PM1258 (PM1258) from Pasteurella multocida (strain Pm70)

KEGG orthology group: None (inferred from 88% identity to bph:Bphy_1940)

Predicted SEED Role

"Probable transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (200 amino acids)

>QEN71_RS23775 TIGR00645 family protein (Paraburkholderia sabiae LMG 24235)
MTAPRPASPGQSRRMRLLPSVIFMSRWLQVPLYLGLIVAQGVYVVLFAKEVWHLVTHAMT
LDETNIMLVVLSLIDVVMISNLLIMVIVGGYETFVSRLGLEGHPDEPEWLDHVNAGVLKV
KLSMALIGISSIHLLKTFIDPDKHSQQAVMWQVIIHVTFLVSALVMALVDRLTTHTHPAH
FHEPAAHGNHTTISNSPEGA