Protein Info for QEN71_RS23595 in Paraburkholderia sabiae LMG 24235

Annotation: cytosine permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 529 transmembrane" amino acids 35 to 56 (22 residues), see Phobius details amino acids 62 to 87 (26 residues), see Phobius details amino acids 108 to 128 (21 residues), see Phobius details amino acids 148 to 169 (22 residues), see Phobius details amino acids 178 to 196 (19 residues), see Phobius details amino acids 208 to 231 (24 residues), see Phobius details amino acids 253 to 277 (25 residues), see Phobius details amino acids 300 to 322 (23 residues), see Phobius details amino acids 342 to 360 (19 residues), see Phobius details amino acids 368 to 389 (22 residues), see Phobius details PF02133: Transp_cyt_pur" amino acids 23 to 447 (425 residues), 173.6 bits, see alignment E=3.4e-55

Best Hits

KEGG orthology group: None (inferred from 89% identity to bpy:Bphyt_1514)

Predicted SEED Role

"Cytosine/purine/uracil/thiamine/allantoin permease family protein" in subsystem Purine Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (529 amino acids)

>QEN71_RS23595 cytosine permease (Paraburkholderia sabiae LMG 24235)
MSSRNESNNSSITTVETFGFERIPDQSRYARPIDLFRLLFGGCNTFSTSVLGSFPVLLGL
SFWAGVASIVIGVLVGSCILAPMSLFGMRNGTNDPVSSGAHFGIHGRIVGSFLALLTSVA
FFSLAVWSSGDALVGGANHMLGLPVNGFTLSVAYGIFAVLVLTVCIYGFRFMLWVNKIAV
WTASLLFIAGIFAFAGPFDSHYAGKVALGAVGFWPAFVSAVLVALSNPVSFASTMGDWAR
YIPQNTPKHRTMLAVMIAQIATFVPFFFGLATATIIAQKAPDFIASNNYVGGLLAISPNW
FFLPVCLIAIIGGMSTGTTALYGTGLDMSSMFPKLLNRVRATLLIGSAAIGFIFLGRFVF
NLVESVSTFSVLINTCSCPWMVIMIIGYVTRRGFYLSDDLQVFNRGGRGGHYWFTHGWNW
RAMGAWIPSALTGLCFVNLPDQFVGPLGELAGGLDISMPVSLTLACTLYVTLLQCFPEPD
GVYGPQGRRWLRGSYKATHARIRQVEPSPARGNRMSAPREEVFDTQDAA