Protein Info for QEN71_RS23565 in Paraburkholderia sabiae LMG 24235

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 449 transmembrane" amino acids 34 to 59 (26 residues), see Phobius details amino acids 69 to 93 (25 residues), see Phobius details amino acids 105 to 126 (22 residues), see Phobius details amino acids 132 to 156 (25 residues), see Phobius details amino acids 177 to 196 (20 residues), see Phobius details amino acids 202 to 221 (20 residues), see Phobius details amino acids 261 to 283 (23 residues), see Phobius details amino acids 296 to 315 (20 residues), see Phobius details amino acids 327 to 348 (22 residues), see Phobius details amino acids 354 to 375 (22 residues), see Phobius details amino acids 390 to 413 (24 residues), see Phobius details amino acids 421 to 440 (20 residues), see Phobius details PF00083: Sugar_tr" amino acids 33 to 228 (196 residues), 58.8 bits, see alignment E=4.8e-20 amino acids 249 to 448 (200 residues), 40 bits, see alignment E=2.5e-14 PF07690: MFS_1" amino acids 37 to 306 (270 residues), 50 bits, see alignment E=2.2e-17 amino acids 299 to 438 (140 residues), 46.8 bits, see alignment E=2e-16

Best Hits

KEGG orthology group: None (inferred from 92% identity to bph:Bphy_1824)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (449 amino acids)

>QEN71_RS23565 MFS transporter (Paraburkholderia sabiae LMG 24235)
MTYTAASTSTPDDSASTSEVQPQRASHAKAIAAITLGNGLEFFDFTIYSFFATIIGKLYF
PVEGQLTQLMLAVGTFGVGFIMRPVGGVVLGAYADRAGRKAAMSLTLWLMTLGSAIIAFA
PTYVSIGLAAPALIILARLIQGFALGGEIGASTSLLMEYGSDRTRGFYGSWQFVSQGLNT
VVGSLLGVALAAMLSTHALESWGWRVPFVIGMAMGPIGVYIRKHLDETLPIASSSGDASV
LEAAAVARPVREIFGTHLRSIAAGVVTTIGGTAANYIVLFYLSTYAIKILHLPMSLALWA
SWTAAFVTVICSPFAGSLSDRYGRKRVLWISRVLLIAAVYPAFMVINAVPTVPVLLGVVA
GLGVLVAFTAVPNIVMLPEMFPREIRATGMSIVYCLGVSIFGGFAQFFATWLIQLSGSTL
APAWYLIGCGVVSLLALPFVRETAGKPID