Protein Info for QEN71_RS23190 in Paraburkholderia sabiae LMG 24235

Annotation: exodeoxyribonuclease V subunit beta

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1241 TIGR00609: exodeoxyribonuclease V, beta subunit" amino acids 16 to 1235 (1220 residues), 831.4 bits, see alignment E=7.9e-254 PF00580: UvrD-helicase" amino acids 20 to 448 (429 residues), 171.9 bits, see alignment E=5.7e-54 PF13245: AAA_19" amino acids 27 to 436 (410 residues), 44.5 bits, see alignment E=4.2e-15 PF13361: UvrD_C" amino acids 705 to 847 (143 residues), 41.8 bits, see alignment E=2.4e-14 PF12705: PDDEXK_1" amino acids 1010 to 1185 (176 residues), 27.3 bits, see alignment E=8.5e-10

Best Hits

KEGG orthology group: K03582, exodeoxyribonuclease V beta subunit [EC: 3.1.11.5] (inferred from 70% identity to bcj:BCAL1097)

Predicted SEED Role

"Exodeoxyribonuclease V beta chain (EC 3.1.11.5)" in subsystem DNA-replication (EC 3.1.11.5)

Isozymes

Compare fitness of predicted isozymes for: 3.1.11.5

Use Curated BLAST to search for 3.1.11.5

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1241 amino acids)

>QEN71_RS23190 exodeoxyribonuclease V subunit beta (Paraburkholderia sabiae LMG 24235)
MSGATWMHALAVQELDVFACELDGVNQIEASAGTGKTWNICALYVRLLLEKNLSADQILV
VTFTKAATAELHERIRGRLAEVQRAIETGDDGGDPFIIRLFETTLSEERGVDLEAAAKIV
RRALRTFDQAAIHTIHAFCQRALQEAPFAAAMPFAFEMEADDAALRFELAADFWREQVEA
VAAQHSSFAAWLVEKRASPASLDEQLARRLKKPLAQLRWGDVGELEGASPGEIQARFDAA
CEMWRAERDNIVRLLEAAQERLSKTSHKPEFISAAIDAWSDYFAQEDCHAPPPKAALKLT
AAALTKGTKKNFEPPAHAFFIVADEIAAASLAAEVAQRARWLGLVQRWLDHAPYELAARK
RTRRVVSFDDLLSNLHRALATHVWLADALRKRYPAALIDEFQDTDPLQFAIFNRIFAPQG
PLFLVGDPKQAIYSFRAADLHTYLAARAQASARYTLAVNQRSTAPVVEACNRFFEANPRA
FVLEGLDYQPVRAGERQRPPLVDKDSEGGGDFRAWMLPKGDAALTKRDAQRAASEACAAE
IVRLLRGAREGSVMIGDKPLAPGNIAVLVQTHKQGSLIKRVLSAWGVGSVELAQASVFES
LDAEQIERVLAAVDTPGDLRRLRAALATDWFGLDAASLWQLEHIDEAIVTTGNAAPSVDA
MSWVERFSRYRMLWHERGFAVMWRTLMRELRVAQRIVSGAEGERRLTNVNHLAELVQARA
ATQPGIAPTLRWLAAQREGAGGGEEAQLRLESDRNLVQIVTVHKSKGLEYAVVFCPFLND
GNMREPPSSGLPDAREYHDDDGAAVLHYGCDEEQADLAGRQATREQAAERARLIYVALTR
AVYRCYVVAGTYLSARSTKESARSVLNWLVAGSERDFDEWLAKPLDEAAIYQHWRALEGG
PMAIADLPAVARREPLEGVADSGARLRARANRRSLRDAWRMASFSSLIAAGSRADEAAAA
QAVNEEARPDHDELADVSSGPNAPVFDMIAAPVELAADDILAFPRGPAAGECLHRMFELA
DFSDRSKWPEAIHQALRERPAPAEPELAQRLPAMMQRLLGDVVSTELVPGMTLAALDPKR
RLNELEFLFSAASLDFPALRALLAEYGYPDVALESNALRGFVKGFIDMIVEHQGRFWVVD
WKSNHLGDTRDDYSAAPLDDAMASHAYHLQALLYIVALHRYLRLRLPGYAYETHIGGYLY
LFVRGVRPDWRDDSHAAGVHARQPDPALVFALDALMDGDTR