Protein Info for QEN71_RS22425 in Paraburkholderia sabiae LMG 24235

Annotation: SMR family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 123 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 43 to 70 (28 residues), see Phobius details amino acids 78 to 98 (21 residues), see Phobius details amino acids 104 to 121 (18 residues), see Phobius details PF00893: Multi_Drug_Res" amino acids 51 to 113 (63 residues), 25.4 bits, see alignment E=1.7e-09 PF00892: EamA" amino acids 52 to 121 (70 residues), 28.6 bits, see alignment E=1.4e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to bph:Bphy_0927)

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (123 amino acids)

>QEN71_RS22425 SMR family transporter (Paraburkholderia sabiae LMG 24235)
MNPISLFCILAGVALNATAQLLLKAGTNAVGHFDFTLSNIIPIGWRIATQLPIIGGLACY
VLSVVVWIVGLSRVDVSIAYPMLSLGYVVNAFAAWYLFGEVLSAQRLIGIGVILVGVFIV
ARS