Protein Info for QEN71_RS22280 in Paraburkholderia sabiae LMG 24235

Annotation: CaiB/BaiF CoA-transferase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 410 PF02515: CoA_transf_3" amino acids 17 to 387 (371 residues), 415.9 bits, see alignment E=8.1e-129

Best Hits

Swiss-Prot: 52% identical to SCCT_CHLAA: Succinyl-CoA--D-citramalate CoA-transferase (Caur_2266) from Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl)

KEGG orthology group: K07749, formyl-CoA transferase [EC: 2.8.3.16] (inferred from 95% identity to bph:Bphy_0954)

Predicted SEED Role

"L-carnitine dehydratase/bile acid-inducible protein F (EC 2.8.3.16)" (EC 2.8.3.16)

MetaCyc Pathways

Isozymes

Compare fitness of predicted isozymes for: 2.8.3.16

Use Curated BLAST to search for 2.8.3.16

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (410 amino acids)

>QEN71_RS22280 CaiB/BaiF CoA-transferase family protein (Paraburkholderia sabiae LMG 24235)
MSASTSTTQNGKPAGPLAGVKVLELGTLIAGPFAARFLGEFGADVIKIEDPKGGDPLRKW
RKLYPEVGGTSLWWAVQARNKKSVTINLKADEGKEIVRKLAKEADIVVENFRPGLLEKLG
LGYDVLSAENPGLVMVRLSGYGQTGPYRDRPGFGAIAESMGGLRHITGYPDLPPPRIGIS
IGDSIAALHGVIGALMALHHKQANGGKGQVVDVALYEAVFNMMESVVPEYGVYGMVRERT
GASLPGIVPSNTYPCRDGSIVIGGNSDPIFRRLMIAIDRDDLANDPALAHNDGRVPRTQE
IDGAIAAWLADRTIDEALDVLNAADVPVGRIYSVADMFTDPQYVARQMIQTFKWQDGRDI
TLPNVTPKLSETPGETRWLGPELGEHTDEVLQTLGYDADHIARLHAQQIV