Protein Info for QEN71_RS22265 in Paraburkholderia sabiae LMG 24235

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 274 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 73 to 101 (29 residues), see Phobius details amino acids 120 to 138 (19 residues), see Phobius details amino acids 140 to 159 (20 residues), see Phobius details amino acids 182 to 208 (27 residues), see Phobius details amino acids 235 to 257 (23 residues), see Phobius details PF00528: BPD_transp_1" amino acids 92 to 262 (171 residues), 99.7 bits, see alignment E=8.8e-33

Best Hits

KEGG orthology group: K02050, sulfonate/nitrate/taurine transport system permease protein (inferred from 98% identity to bph:Bphy_0957)

Predicted SEED Role

"ABC-type nitrate/sulfonate/bicarbonate transport system, permease component" in subsystem Alkanesulfonate assimilation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (274 amino acids)

>QEN71_RS22265 ABC transporter permease (Paraburkholderia sabiae LMG 24235)
MWKALRPNRANLAIWQWLLLVLCFVLWYVLTSPTLLPAFYFDDPNKAAFFFGEPQKVLVR
IWEWFASGEIYLHLWITLIETVLAFALGTVLGLGVGLWLALSPLASALFDPYIKAANSMP
RVILAPIFGVWFGLGIWSKVALGVTLVFFIVFFNVYQGVKEVSPVVLANARMLGANRKQL
LRAVYLPSAMSWVFSSLHTSVGLAFVGSVVGEYLGSARGVGYLILQAEGTFDINTVFAGI
LVLTAFALILDAIVGALEKRLMKWQPKSGETEKL