Protein Info for QEN71_RS22110 in Paraburkholderia sabiae LMG 24235

Annotation: AsmA family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 813 transmembrane" amino acids 18 to 40 (23 residues), see Phobius details amino acids 719 to 738 (20 residues), see Phobius details PF05170: AsmA" amino acids 13 to 652 (640 residues), 433.9 bits, see alignment E=1.3e-133 PF13502: AsmA_2" amino acids 510 to 681 (172 residues), 41.3 bits, see alignment E=1.4e-14

Best Hits

KEGG orthology group: K07290, hypothetical protein (inferred from 91% identity to bph:Bphy_0988)

Predicted SEED Role

"exported protein, conserved"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (813 amino acids)

>QEN71_RS22110 AsmA family protein (Paraburkholderia sabiae LMG 24235)
MAVLHSAGMTIGKTIGKILAWLIAVLLILIAVLVVFILTFDWNRARPYVNEKVSEAIGRP
FAIEGDLKVGWRHPVGETGWHAWVPWPRFSAQNITIANPDWTKQKHFATLDEIDFQVKVL
PLLAHDIVIPAINLVNPSVDLERVLDGRNNWTFKLKSSAQPSEWKLDLHDIQLNKGMIAL
SDQQKKIDMQAVVDTLGQPIPIGEAMKQQEEASRKSSAEVVGRQGAKQLTAQAKAAAASE
ASGASEVAPGSPVASGASAPAVTAGAGASTAVAASGAPASSTGTAVAQRPNAPQYGIGWT
VKGTYNRSPVSGNGKLGGVLALQDMSRPFPVQADVKAGDLRIALVGTVTDPAHLAAVDLR
LWLQGTSLDHLYDLTGITLPETPPYATEGHLIGNFKQGASVFRYENFTGRVGGSDLNGTL
VYTQRATRPLLEGTLVSNLLQFKDLAPIIGADSNASKKKRGDTSRQPSNKALPTEEFKTD
RWKAIDANVKFTGRRIIKDPALPITDLYTHVVMTDGVLSLEPLKFGVAGGSLASNIHLDG
STTPLKGRFSTEARHLKLKQLMPTAKTMQSALGEINGDAALSATGNSPAALAGTSNGEVK
LLITDGAVSRLLMEAAGLNVANVVYEKLFGSRDVQINCAAADFVVTNGVLDSRVFALDTQ
DAVINVDGTVNMKDESMDLGVHPHTKGFRIFTLRSPLYVKGTFKDPHVGVNAAALAVRGG
AMVGLGLINPFAALIPLIAPSNNKPLPCQQLMAAMQAEHPTAPPPGQRENGKGIKVPAGT
PGASEAAPSKKPAAPVNGASLPGPAHAADYKGS