Protein Info for QEN71_RS21485 in Paraburkholderia sabiae LMG 24235

Annotation: hopanoid biosynthesis-associated protein HpnK

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 286 TIGR03473: hopanoid biosynthesis associated protein HpnK" amino acids 14 to 280 (267 residues), 399.3 bits, see alignment E=4.3e-124 PF04794: YdjC" amino acids 16 to 267 (252 residues), 235.3 bits, see alignment E=6.3e-74

Best Hits

KEGG orthology group: None (inferred from 90% identity to bph:Bphy_1178)

Predicted SEED Role

"cellobiose phosphotransferase system celC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (286 amino acids)

>QEN71_RS21485 hopanoid biosynthesis-associated protein HpnK (Paraburkholderia sabiae LMG 24235)
MTQRVTQTKAIPRRALIVTADDFGLHVRINEAVERAHLHGILTSASLMVSAPATADAVHR
ARQYPSLRVGLHLVLADGVPMLATHLVPALVDRHGRLGDRMVRDGFRFFLLPEVRRQLRA
EIRAQFQAFARTGLALDHVNTHKHFHLHPTVLALIIEVGSEYGLNAMRLPYEPGSPAWIR
PWMARVRKQLDNAGIAHNDYVIGLSQTGKLDEAALLAALARLPQGVGEIYCHPAVAGVGA
ITPTMQTYRHTDEFDALVSERVASALAASGAITGGFADVFAQRAYM