Protein Info for QEN71_RS21395 in Paraburkholderia sabiae LMG 24235

Annotation: poly-beta-1,6-N-acetyl-D-glucosamine synthase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 433 transmembrane" amino acids 7 to 29 (23 residues), see Phobius details amino acids 295 to 323 (29 residues), see Phobius details amino acids 332 to 354 (23 residues), see Phobius details amino acids 370 to 392 (23 residues), see Phobius details TIGR03937: poly-beta-1,6 N-acetyl-D-glucosamine synthase" amino acids 5 to 408 (404 residues), 577.6 bits, see alignment E=6.9e-178 PF13641: Glyco_tranf_2_3" amino acids 47 to 270 (224 residues), 108.7 bits, see alignment E=1e-34 PF00535: Glycos_transf_2" amino acids 50 to 217 (168 residues), 100.3 bits, see alignment E=2.9e-32 PF13506: Glyco_transf_21" amino acids 115 to 270 (156 residues), 50.3 bits, see alignment E=5.2e-17 PF13632: Glyco_trans_2_3" amino acids 130 to 318 (189 residues), 85.1 bits, see alignment E=1.6e-27

Best Hits

KEGG orthology group: K11936, biofilm PGA synthesis N-glycosyltransferase PgaC [EC: 2.4.-.-] (inferred from 66% identity to rpf:Rpic12D_3764)

Predicted SEED Role

"Biofilm PGA synthesis N-glycosyltransferase PgaC (EC 2.4.-.-)" (EC 2.4.-.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.4.-.-

Use Curated BLAST to search for 2.4.-.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (433 amino acids)

>QEN71_RS21395 poly-beta-1,6-N-acetyl-D-glucosamine synthase (Paraburkholderia sabiae LMG 24235)
MSVISNFVFYYPLLMAYLWMVGGLLHYLLIERRDAGRKVAPPLSSYPKVSVVVPCYNEAD
NVREVIACLDKLNYPNYNIIAINDGSRDETGAILNQLVNVYPKLVVVHQHQNEGKAIGLT
TAAMLSDAEYLMCIDGDSLLDKEAIGWMLRHFLDDASVGAVTGNPRIRTRSSLLGRMQVG
EFSSIVGLIKRTQHMYGRLLTVSGVVSMFRKRALQEVGFWSSDMLTEDIDISWKLQVQGW
GVQFESRALSWILMPETFRGLYKQRLRWAKGGIQVLFKYAGEVLSRRNMMMWPIFVEYAT
SIVWAYCMLFTLVMMAATALFTLPESWRFAFVPRGTGVLLFATCCAQILLGCLIDRRYDK
NLLRYFIDTVWYPAAFWAISMIASVIALPGVISQRRRKRARWVSPDRGIRSSGAVAADAS
TALLAQAGAQQPE