Protein Info for QEN71_RS21255 in Paraburkholderia sabiae LMG 24235

Annotation: DeoR/GlpR family DNA-binding transcription regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 251 PF08279: HTH_11" amino acids 6 to 53 (48 residues), 33.7 bits, see alignment 4e-12 PF08220: HTH_DeoR" amino acids 6 to 60 (55 residues), 60.8 bits, see alignment E=1.3e-20 PF00455: DeoRC" amino acids 73 to 230 (158 residues), 144.6 bits, see alignment E=4e-46

Best Hits

KEGG orthology group: None (inferred from 98% identity to bph:Bphy_5063)

Predicted SEED Role

"Transcriptional regulators of sugar metabolism"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (251 amino acids)

>QEN71_RS21255 DeoR/GlpR family DNA-binding transcription regulator (Paraburkholderia sabiae LMG 24235)
MLAEQRHQYILAKVTKTGALSVAELVRELNVSRETIRRDLNALAERGLIVTTHGGALSSD
RREPDLDTRDAANASAKRAIGERAAQLVPDGASVIIDSGSTTHAVARALTDRHRLTVYTN
DWRIALLLGRRNDNRVTLLGGELSDNEDAAFGLDTITQLSHYHADFALIGAGGITPDAQL
SDYSRMAAEVRSKMIGAGATVIIVADNSKFGRVTPVRIEGLELARYVVTELAPDRALAKA
ITARGPEILIA