Protein Info for QEN71_RS21245 in Paraburkholderia sabiae LMG 24235

Annotation: DMT family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 293 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details transmembrane" amino acids 32 to 54 (23 residues), see Phobius details amino acids 66 to 84 (19 residues), see Phobius details amino acids 90 to 112 (23 residues), see Phobius details amino acids 121 to 141 (21 residues), see Phobius details amino acids 156 to 176 (21 residues), see Phobius details amino acids 188 to 208 (21 residues), see Phobius details amino acids 220 to 241 (22 residues), see Phobius details amino acids 250 to 269 (20 residues), see Phobius details amino acids 274 to 291 (18 residues), see Phobius details PF00892: EamA" amino acids 3 to 135 (133 residues), 40.4 bits, see alignment E=1.6e-14 amino acids 163 to 291 (129 residues), 45.4 bits, see alignment E=4.7e-16

Best Hits

KEGG orthology group: None (inferred from 92% identity to bph:Bphy_5061)

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (293 amino acids)

>QEN71_RS21245 DMT family transporter (Paraburkholderia sabiae LMG 24235)
MLVVFNAVVFVVLWSTGFVVARAIKPFADPNLFLLARFGGTALLFMAAALVARVEWPTGR
ALGKHLIAGALLQGVYLGAGYWAVAQGMSAGIMALLGALQPLLTAAVAAPLFGERLSGRG
WTGMMLGLVGVALVLEPKLVAAPSPVVQGHAGDVPQWLVIGVSILAVCAITAGTLIQKTS
LSKADIRSASAVQNFGAAVVVLVFALALGEHKWIPSPTLWMSLAWGIVMLSGVSVTLLVW
MVRRGDASRATALLFLAPPLAALEGYVGFGETLTAIQVAGFVVALIGVLLARS