Protein Info for QEN71_RS19990 in Paraburkholderia sabiae LMG 24235

Annotation: DMT family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 278 transmembrane" amino acids 6 to 23 (18 residues), see Phobius details amino acids 30 to 52 (23 residues), see Phobius details amino acids 58 to 79 (22 residues), see Phobius details amino acids 89 to 108 (20 residues), see Phobius details amino acids 115 to 132 (18 residues), see Phobius details amino acids 144 to 165 (22 residues), see Phobius details amino acids 172 to 190 (19 residues), see Phobius details amino acids 210 to 230 (21 residues), see Phobius details amino acids 235 to 254 (20 residues), see Phobius details PF00892: EamA" amino acids 145 to 277 (133 residues), 33.5 bits, see alignment E=2.2e-12

Best Hits

KEGG orthology group: None (inferred from 94% identity to bph:Bphy_4620)

Predicted SEED Role

"Permeases of the drug/metabolite transporter (DMT) superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (278 amino acids)

>QEN71_RS19990 DMT family transporter (Paraburkholderia sabiae LMG 24235)
MESSIVLLVLISAMLHASWNAFLRLAEDRIWLLGMMSIPYIAVSAIAVTLLPLPEPAAWP
YIAASVVLEFGYCLALIRAYRSGDFGQIYPIARGLSPLLVFAGALIFAHESLKPLAATGV
ALVSIGIVSLAFRRDMRFSGESVPYALLTGLFISAYSVVDGIGARVAGNGLSYIMWVYLL
WNVPQFLLVWHWRGGAKGLFTSRETMFKGMLSGVIALTAYCLIIEAYRFLPIAMVSALRE
LSSIFAVLIGFSFMHERLTPRRVFACTLVTLGAVLIRL