Protein Info for QEN71_RS19960 in Paraburkholderia sabiae LMG 24235

Annotation: MlaD family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 521 transmembrane" amino acids 6 to 24 (19 residues), see Phobius details amino acids 102 to 118 (17 residues), see Phobius details PF02470: MlaD" amino acids 30 to 118 (89 residues), 41.8 bits, see alignment E=5.3e-15 amino acids 146 to 208 (63 residues), 27.9 bits, see alignment E=1.1e-10 amino acids 277 to 380 (104 residues), 36.5 bits, see alignment E=2.4e-13

Best Hits

KEGG orthology group: K06192, paraquat-inducible protein B (inferred from 56% identity to bpd:BURPS668_3340)

Predicted SEED Role

"Paraquat-inducible protein B" in subsystem Oxidative stress

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (521 amino acids)

>QEN71_RS19960 MlaD family protein (Paraburkholderia sabiae LMG 24235)
MSGAPSAFWLVPVAALLISGALLIRTGMQRGPRITISFTTAESLEAGKTRVRYRDVEIGR
LKDLHLSTDRTHVLADVQLDDSAKQFAACGTRYWVVRPRIGMTGISGLSTAISGAYIAAD
TAPASRACKAFVGLEAPPFVTRDRKGKRFVLHADSLGSLTAGSPLLFRRVQAGQVLGYAL
SADGAEVDVDVFVNAPYDQYVTSGTVWWQASGIDMSFGSDGFRLDTQSVASLLSGGIAFD
TLKRAPAPRPAPEGASFVLATDRTQATQGAADGTAARVFMRFEQSLRGLSIGAPVDFHGV
ELGRVAAIDVDFDPATGRIDMIAALDLYPTRLGRRYRQALGNGDSAAGRNLLHRLIANGL
RGQLRMGSVLTGQRYVALDFFPRAPKVAFDPQRTPVELPTVPNTLEELQDQLAGIVDKLD
RVPFDQIGRSLDTTLQTAASLFQRVDTELMPEARATLSAAQQSFDAANATLAHGSPLQSD
LQGALTELRRTLVSLNSLADYLQQHPESIVWGKSLTRPGQQ