Protein Info for QEN71_RS18905 in Paraburkholderia sabiae LMG 24235

Annotation: cytochrome c

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 440 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF13442: Cytochrome_CBB3" amino acids 46 to 143 (98 residues), 23 bits, see alignment E=8.3e-09 amino acids 333 to 415 (83 residues), 26.4 bits, see alignment E=7.1e-10 PF00034: Cytochrom_C" amino acids 47 to 145 (99 residues), 28 bits, see alignment E=4.5e-10 amino acids 203 to 302 (100 residues), 26.6 bits, see alignment E=1.2e-09 amino acids 334 to 419 (86 residues), 39.2 bits, see alignment E=1.5e-13

Best Hits

KEGG orthology group: None (inferred from 90% identity to bph:Bphy_4796)

Predicted SEED Role

"Putative diheme cytochrome c-553" in subsystem Soluble cytochromes and functionally related electron carriers

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (440 amino acids)

>QEN71_RS18905 cytochrome c (Paraburkholderia sabiae LMG 24235)
MTRASIRRLAACAFVGAWALAFATASSDEYIGTVPSSKIAASRETLQRGEYVAKAGDCAG
CHTAVEGKPYAGGLGLASPFGTIMSSNITPDRQSGIGQYTYEEFARALREGVARGGKRLY
PAMPYASFAKVNDDDMDALYAYMMQGVAPVAQPTPPSHVAFPFNQRWTLRFWQLAFAPKG
VYTPRADRDAQWNRGAYLVQSLGHCGACHTPRGAGFQERGYDESTKTYLTGGVNDHWFAP
NLTGDNGSGLGRMNEADIASFLKTGHAGGVIAYGSMVEQIEDSSQYLTNADAQAIAHYLK
SLPAQNSSGTYTPHVEPARSPVNGSRVPDELSLGFNVYRGFCASCHREDGMGVPNAFPSL
AGNPSVLTEDTTSLIRLLVEGGNSPSTLTGPPRQSMPGFAATLANVQIAQVLTYIRSAWG
NNAQPITANDVSSLRSKLHK