Protein Info for QEN71_RS18750 in Paraburkholderia sabiae LMG 24235

Annotation: PAS domain S-box protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 795 TIGR00229: PAS domain S-box protein" amino acids 21 to 132 (112 residues), 60.6 bits, see alignment E=8.1e-21 amino acids 136 to 262 (127 residues), 75.7 bits, see alignment E=1.8e-25 PF00989: PAS" amino acids 24 to 123 (100 residues), 34.8 bits, see alignment E=4.5e-12 amino acids 140 to 252 (113 residues), 37.6 bits, see alignment E=6e-13 PF13426: PAS_9" amino acids 25 to 126 (102 residues), 47.4 bits, see alignment E=6.1e-16 amino acids 152 to 254 (103 residues), 49.3 bits, see alignment E=1.6e-16 PF08448: PAS_4" amino acids 152 to 256 (105 residues), 32.9 bits, see alignment E=2e-11 PF02518: HATPase_c" amino acids 385 to 505 (121 residues), 77.7 bits, see alignment E=2.7e-25 PF00072: Response_reg" amino acids 528 to 639 (112 residues), 44.4 bits, see alignment E=4.9e-15 amino acids 676 to 780 (105 residues), 62.9 bits, see alignment E=9e-21

Best Hits

KEGG orthology group: None (inferred from 68% identity to bug:BC1001_5389)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (795 amino acids)

>QEN71_RS18750 PAS domain S-box protein (Paraburkholderia sabiae LMG 24235)
MHGDENNIQATWPSLLIGRISEYAIFRLTERGEVASWNPGAKRIKGYEADEIIGRHFSVF
YTDGDRRNHVPEQVLRKAREQGQHDTEGWRVRKDGTKFWASILVTALYTDTGAFVGFGKV
VRDTTDKRLAYEAVTESERRFRLLVQGVTDYAIFMLSPEGLVTNWNLGAARIKGYQANEV
IGAHFRQFYTPEDAALGLPERGLHTAAIEGRFETEGWRVRKDGTRFWANVIIDAIRDETG
ELIGFAKITRDVTERKTAQEQLEKARVALLQSQKMEALGKLTGGVAHDFNNVLQVLRGNL
ELLEGRHGRDAWTQERLYKAIEAVEHGATLASQLLAFGRRQALQPVVVNLAVMLRSMDDL
LRRALGEVINVETVIAGGLWNTLVDPNHLENVVLNLAINARDAMPEGGKLTLELSNAMLD
EHYTALADDVRDGQYVLLAVTDTGTGMSREIMERAFEPFFTTKPEGQGTGLGLSMAYGFI
KQSGGHVRIYSEPGHGTTVKVYLPRSMAEAVDLEPPEPVALAGGAETILVVEDDRRVQVT
VLETLRQLGYTVLKADDAQSALAIVQSGMNIDLLFTDVVMPGTMRSTELAKRATLMLPHL
KVLFTSGYTQNAIVHGGRLDPGVHLLSKPYSREQLASKIRRLLGPAGASDADAAVASPSP
PSLPSQPSYTPPDLTVLVVDDDNGSREAVNELLTTMGYDVHEAADAEAAMRVLMAEKVDV
LLTDITLPGQSGIELARVAVGRNPDIRVIFVSGGNTPTPEEVGFGCASLGKPFTGDQLHA
LIRAMHGRRKQTNEE