Protein Info for QEN71_RS18120 in Paraburkholderia sabiae LMG 24235

Annotation: IS481 family transposase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 379 PF13518: HTH_28" amino acids 12 to 63 (52 residues), 43 bits, see alignment 1.5e-14 PF13384: HTH_23" amino acids 17 to 55 (39 residues), 25.9 bits, see alignment 2.7e-09 PF13011: LZ_Tnp_IS481" amino acids 20 to 82 (63 residues), 46.5 bits, see alignment E=1.8e-15 PF13551: HTH_29" amino acids 22 to 67 (46 residues), 28.5 bits, see alignment 5.3e-10 PF13565: HTH_32" amino acids 39 to 113 (75 residues), 51.6 bits, see alignment E=4.6e-17 PF00665: rve" amino acids 136 to 241 (106 residues), 71 bits, see alignment E=3.7e-23 PF13683: rve_3" amino acids 230 to 295 (66 residues), 77.6 bits, see alignment E=1.9e-25

Best Hits

KEGG orthology group: None (inferred from 59% identity to bxe:Bxe_A0541)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (379 amino acids)

>QEN71_RS18120 IS481 family transposase (Paraburkholderia sabiae LMG 24235)
MPWEAKNTMNLREEFVSLAATQALSFSELCRRYRISRQTGYKWLDRHKAEGPGGLADRSR
RPHHSPLRSPEHIEARVLELRREHGWGGRKIERRLKDLGETEVPAPATITEILRRHGLID
EQASQQRQHWQRFEHAHPNLLWQMDFKGDVQTLKDGRCMPLTVIDDHSRYNLVLSACSRT
TTQVVQAALERAFRCYGLPARINTDNGAPWGSPSAPGQLTELAVWLIRLGILVSYSRPYH
PQTNGKDERFHRTLKAEVLDRQAFSTHAHMQQALDRWRHVYNVERPHEALGMATPITRYA
CSLRAMPGRVPEPEYGCGDEVLRVNASGVVRLRGQKLKLSIALKGLQVAARMSEKEDGVI
EIWFAHQRVAKLDLKAPKP