Protein Info for QEN71_RS17575 in Paraburkholderia sabiae LMG 24235

Annotation: succinate dehydrogenase, cytochrome b556 subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 138 transmembrane" amino acids 34 to 54 (21 residues), see Phobius details amino acids 74 to 95 (22 residues), see Phobius details amino acids 116 to 136 (21 residues), see Phobius details PF01127: Sdh_cyt" amino acids 19 to 130 (112 residues), 88.9 bits, see alignment E=1.4e-29 TIGR02970: succinate dehydrogenase, cytochrome b556 subunit" amino acids 21 to 131 (111 residues), 115.1 bits, see alignment E=1.1e-37

Best Hits

KEGG orthology group: K00241, succinate dehydrogenase cytochrome b-556 subunit (inferred from 92% identity to bph:Bphy_5586)

Predicted SEED Role

"Succinate dehydrogenase cytochrome b-556 subunit" in subsystem Succinate dehydrogenase

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (138 amino acids)

>QEN71_RS17575 succinate dehydrogenase, cytochrome b556 subunit (Paraburkholderia sabiae LMG 24235)
MAEAVKKPRPEFRNIGIGQILAAYRLPLAGRVSILHRVSGGLLFIFLPFLLYLFDQSLTS
ELSFEVFKGFLSNIIVKLITLVLAWAFLFHFCAGVRHLLMDTNHDAVTKERGKSTSVVVL
VVSSILTIAFALKLFGAF