Protein Info for QEN71_RS17260 in Paraburkholderia sabiae LMG 24235

Annotation: sugar ABC transporter substrate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 349 signal peptide" amino acids 1 to 39 (39 residues), see Phobius details PF00532: Peripla_BP_1" amino acids 42 to 229 (188 residues), 38.1 bits, see alignment E=1.3e-13 PF13407: Peripla_BP_4" amino acids 45 to 303 (259 residues), 170.3 bits, see alignment E=6.1e-54

Best Hits

KEGG orthology group: K02058, simple sugar transport system substrate-binding protein (inferred from 100% identity to bph:Bphy_4302)

Predicted SEED Role

"Ribose ABC transporter, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)" in subsystem Bacterial Chemotaxis (TC 3.A.1.2.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (349 amino acids)

>QEN71_RS17260 sugar ABC transporter substrate-binding protein (Paraburkholderia sabiae LMG 24235)
MGFAKEPRAARRFVQGALTAAVAAACVAGIGFSTAAQAADSSKVGLGLPLLTSPFWQSYN
NYLPKYAKEMGIDILAPVNSNNDPAQQITDMNNMVNLGAKGIVVGPIDSAAISRALDSAS
AKDVKVVAVDVAPTQGKVAMVVRADNRAYGTNACKYIGEHVKSGKVVQIMGDLASVNGRD
RSEAFRACLKNYPALSLLEIPAGWKGDVAASSLDSLLTANPDVKAIYMQAGGVYLSPTLQ
TLRRKQMLFPAGDAKHVVIVSNDGIPQEFDAIRKGEIDATISQPADLYAKYGLYYMKAAL
AGQTFKPGPTDHGSNIVQLQPGVLEDQLPAPLVTKANVDDKNLWGNTLK