Protein Info for QEN71_RS16410 in Paraburkholderia sabiae LMG 24235

Annotation: MMPL family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 870 transmembrane" amino acids 20 to 39 (20 residues), see Phobius details amino acids 277 to 294 (18 residues), see Phobius details amino acids 300 to 321 (22 residues), see Phobius details amino acids 327 to 349 (23 residues), see Phobius details amino acids 361 to 384 (24 residues), see Phobius details amino acids 404 to 424 (21 residues), see Phobius details amino acids 455 to 474 (20 residues), see Phobius details amino acids 717 to 735 (19 residues), see Phobius details amino acids 747 to 767 (21 residues), see Phobius details amino acids 773 to 794 (22 residues), see Phobius details amino acids 806 to 826 (21 residues), see Phobius details amino acids 838 to 858 (21 residues), see Phobius details TIGR03480: hopanoid biosynthesis associated RND transporter like protein HpnN" amino acids 6 to 862 (857 residues), 1040.1 bits, see alignment E=0 PF03176: MMPL" amino acids 51 to 426 (376 residues), 74.6 bits, see alignment E=3.6e-25 amino acids 654 to 858 (205 residues), 22.5 bits, see alignment E=2.6e-09

Best Hits

KEGG orthology group: K07003, (no description) (inferred from 96% identity to bph:Bphy_4133)

Predicted SEED Role

"Hopanoid-associated RND transporter, HpnN"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (870 amino acids)

>QEN71_RS16410 MMPL family transporter (Paraburkholderia sabiae LMG 24235)
MLKSSIVRLVVWSVRRPLQVIGLSLVLAVLSAIYVVHHFKINTDISRLVENDAQWSALEQ
QIDKAFPDRGQTLLVVVEAGAPEYADAAANTLAAALQKETSEFDSVMQPGSGPFFEKNGL
LFPSLADVQSTTSQLVKARPLINQLAHDPSLTGLAGTLTTSLLLPLQIGQVKLGDMSNLL
SRSATVIDHVLANEPAVFSWRALVDKDAAKVPARAFIVVQPKLNFEALQAGAKASEEIRK
MAASLDLDSQYGARIRLTGEQPLADEEFASVQDGAEINGIVTFFVVLGILWLALRSGRLI
VAVFITLFVGLVITAALGLMMVDALNMISVAFMVLFVGLGVDFGVQFGVKYREERNRDDR
LAAALIHTAYSIGVPLTLAAVAVAESFFSFLPTAYRGVSELGKIAGVGMFVAYLTNMTLL
PALIKVFNPPGEAESPGFTFLAPVDDFLDRNRTPVLIATAVLIIGASPLLLHLRFDFNPL
HLKDPHTESMATLISLNDAPEAAVNNVRALAPSLSDADKIAARLSKLPEVGRTTTLTTFI
PPDQPQKLELISSAAQQLLPALTQTPAPPSTDAVRVAALKRTANQLSLAAEDHPGPGAAD
AKHLSDTLNKLAAADVSTRDRAERAMSVPLKISLKQLATLLQPSEITRENVPKDIADSWV
SKTGQALVEISPKVPPGTDPGDDVMLRNFAKAVKAAEPGAIGGPISILHSANVIIKSFVQ
AGAWAILSITALLWLTLRRFGDVLRTLVPLLVSAVVTLELCVVFGMPLNFANIIALPLML
GVGVAFKIYFVMAWRRGQTGLLQSSLTHAVLFSAATTATAFGSLWLSHHPGTSSMGRLLA
LSLLCTLIGAVVFQPVLMGKPRARRASKKQ