Protein Info for QEN71_RS16040 in Paraburkholderia sabiae LMG 24235

Annotation: DNA-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1149 PF11740: KfrA_N" amino acids 12 to 127 (116 residues), 53.8 bits, see alignment E=1.6e-18

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1149 amino acids)

>QEN71_RS16040 DNA-binding protein (Paraburkholderia sabiae LMG 24235)
MSTDADTTMIDEQVAAIADRMTEEGRLVSPVTIWAEVRSGSIVSVAAALQRWRDAREPQI
PPVEAQKAMPGEFAETLMEVARRIWTASQDDAERLLSVGLGAATQQVDVFRKERDEALAA
YQKTDEEVETGRERLDGLRNDLRAVQDSASQVKAELSAANARAEAAEASIEDLTQRASSG
EARLAAIQTSLEDQHRANEWLAATVSSKNEEISRISRERDDARRQVATLDEACQAKSEEA
ERLSQEASAAVARADAATAQANESAARLATVETDLSDTRNALATERDAALEHAAEVAEQR
MELERIGRDLDESRAQVSTLTEAQTLATAQLEQATQAASAANERADAETQRAAQLEQSLT
IEREATAAQRDELQRVTQELDGARTQLNMLTDAQTAAKHRAEAAEQRATQLEQSLTVERE
ATAAQSEELQRVTRELDEARSKISGLTDAQTAAAAELARVTQDASAAKERADAAEQRATQ
LEQSLAAEREAAAAQSDERQRIARELDEARAKNESLTAAHAAASADVTRLTEEASAAREQ
VSALEQSLAAAREVTALRTSDLQRATQELEAARTQINALTESQTAASAELARVKHDVTAA
TERAQTAEQRAAQLEQSLAAEREAAEARSREAAAQASAQSSELQRVTRELEDAGKQISTL
TVAQTAMNAELASVTQDASAAKSRAETAEQQIAQLEQNLAAEREAVTARSAEASAQSNEL
QRVTGELDEARNQISTLTQTLATERDAAMARNDEASAQLEEVRKQNSALSDSQNAANTEL
ARLTQDASAQSTELQRVTRELDEARSKIDALTSAQTSADAELQRLEQEASAAKQRADAAE
QQTAQLNQSLTSERDAASARGTEASAQRDELQRVKQELDEARKQIDTLTQAQTSASAELK
RLEGDATAAKERADAAERQVTQSQQSLTSEREAAATRNDKASTQLDELQRVARELDEARA
QISAMSESQTAASAELARATQDAFAAKERADAAEQRAAELSQTLAERPREQTAAKSTQAG
TQAGEQSGGIDVVEEIASLQRQLAAQSKAHTKAYNDLRANADQWVTYAKDIKQRLEQANE
KILFIDARSTGEVALLRRLSFELERLKPDHELVFREAQKKLIGATMAQQLAQKGYSYDPA
TAVMSKSEG