Protein Info for QEN71_RS15905 in Paraburkholderia sabiae LMG 24235

Annotation: carbohydrate ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 281 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 75 to 96 (22 residues), see Phobius details amino acids 108 to 132 (25 residues), see Phobius details amino acids 145 to 167 (23 residues), see Phobius details amino acids 188 to 211 (24 residues), see Phobius details amino acids 246 to 267 (22 residues), see Phobius details PF00528: BPD_transp_1" amino acids 89 to 275 (187 residues), 71.3 bits, see alignment E=4.5e-24

Best Hits

KEGG orthology group: K02026, multiple sugar transport system permease protein (inferred from 99% identity to bph:Bphy_4059)

Predicted SEED Role

"Nucleoside ABC transporter, permease protein 1"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (281 amino acids)

>QEN71_RS15905 carbohydrate ABC transporter permease (Paraburkholderia sabiae LMG 24235)
MNVKMKRTVWCWLALSPLIVVVLFPFAVMLFTALKPAQEVFIYPARWLPVHWQWQNFADM
WTAANFGVALRNSTIISLLSTALALAVSLPAAYALARFPFRGRGLYRQFLLVTQMLSPIL
LVVGLFRLAAMIPYGDGNLVDSKIGVIVSYAAFNIAFAVWMLSSYFATVPRDLEESAWLE
GCSRTRAVFKVFLPLAVPAIVVTAIFTFINAWNEFAVVYTLIRSPENKTLTVQVTDMVAG
KYVVEWHLVMAATLCATLPVSIVFAWLQRYLVKGLALGAVK