Protein Info for QEN71_RS15415 in Paraburkholderia sabiae LMG 24235

Annotation: urea carboxylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1203 PF00289: Biotin_carb_N" amino acids 1 to 109 (109 residues), 146.6 bits, see alignment E=1.5e-46 TIGR02712: urea carboxylase" amino acids 2 to 1200 (1199 residues), 1840.3 bits, see alignment E=0 PF02786: CPSase_L_D2" amino acids 116 to 319 (204 residues), 196.8 bits, see alignment E=1.4e-61 PF07478: Dala_Dala_lig_C" amino acids 145 to 291 (147 residues), 37.2 bits, see alignment E=8.9e-13 PF02785: Biotin_carb_C" amino acids 338 to 446 (109 residues), 104.4 bits, see alignment E=1.4e-33 TIGR00724: biotin-dependent carboxylase uncharacterized domain" amino acids 455 to 765 (311 residues), 289.3 bits, see alignment E=3.1e-90 PF02626: CT_A_B" amino acids 478 to 750 (273 residues), 315.7 bits, see alignment E=1.2e-97 PF02682: CT_C_D" amino acids 804 to 1022 (219 residues), 136.8 bits, see alignment E=3.3e-43 PF00364: Biotin_lipoyl" amino acids 1140 to 1199 (60 residues), 54.3 bits, see alignment 3.9e-18

Best Hits

Predicted SEED Role

"Urea carboxylase (EC 6.3.4.6)" in subsystem Urea decomposition (EC 6.3.4.6)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 6.3.4.6

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1203 amino acids)

>QEN71_RS15415 urea carboxylase (Paraburkholderia sabiae LMG 24235)
MFDKVLIANRGAIACRILRTLRELNVEGVAVYSEADRASRHVSLADTACSLGDGAASVTY
LDIAKILEIARAQGAQAIHPGYGFLSENAAFAEACEAAGIAFIGPTPSQLRAFGLKHTAR
AIAAEQGVPMLEGTGLLDGIDAALEAAKRVGYPVMLKSTAGGGGIGMRVCRSDEELAAHF
DIVKRLGQNNFSDAGVFLEKYIEKARHLEVQVFGDGQGAAIALGVRDCSVQRRNQKVLEE
TPAPNLPDGVEAALCDAAIRLAQAVSYRSAGTVEFVYDSDAARFYFLEVNTRLQVEHGVT
EQVWSVDLVRWMIELAAGTLAPLNVLSRDLKPQGHAIQARLYAEDPGRDFKPCPGLLTDV
SFPSADGRALRIDTWIEAGCEVPPWFDPMLAKLIAWQPTRDEARHALDAALQASRIYGVE
TNRDYLRQILADTPFASGHPWTRCLEGLRYRASTFEVLSGGTQTTVQDYPGRPGYWAVGV
PPSGPMDDRALRLGNRLLGNDAQAAALEITMSGPTLRFNTDAIVVVTGATLPVMLDDIPQ
PMNTTFAVTAGSTLALGTIRGAGARAYLCVRGGLDVAQYLGSRSTFTLGQFGGHGGRALR
AGDVLHLHALTDRDTGATLPSTLAHRLDDVRVLRVIYGPHGAPEYFSARYIEQFLDTDWE
IHFNSSRTGVRLIGPKPEWTRADGGEAGLHPSNIHDNPYAVGAIDFTGDMPVILGPDGPS
LGGFVCPVTVIEADLWQIGQLKAGDKVRFIPVDITTARAAAHARLQEVSTLTAHAVSPDN
DAPTTLQSPIVLNVGEGDERLVARLSGDTHLLLEIGPPELDLVLRFRGHALMQSLEALQL
PGVIDLTPGIRSLQVHYQPEQLPLATLLDHVAATWQRVLLQKDLRAPSRVVHLPLSWDDP
ACQLAIDKYMTTVRKDAPWCPSNLEFIRRINDLDSIDAVKRVVFDASYLVMGLGDVYLGA
PVATPLDPRHRLVTTKYNPARTWTAENSVGIGGAYLCVYGMEGPGGYQFVGRTLQMWNRY
RDIADFAGRPYLLRFFDQIRFYEVSADELLRIREAFPLGRYPLKIEETELSLADYQAFLE
RDADEIAQFRTRQQAAFQAERQRWHDAGSNEDALEPPVAADAEIAPLTDGQIAVDSEIAG
NLWQVRVEPGATVEAGDVLLVIESMKMEISVVAPCAGTVGEIHVAPGSPVRAGQRVVVLE
QHA