Protein Info for QEN71_RS15395 in Paraburkholderia sabiae LMG 24235

Annotation: ABC transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 271 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 82 to 105 (24 residues), see Phobius details amino acids 113 to 133 (21 residues), see Phobius details amino acids 138 to 156 (19 residues), see Phobius details amino acids 168 to 187 (20 residues), see Phobius details amino acids 193 to 216 (24 residues), see Phobius details amino acids 231 to 251 (21 residues), see Phobius details PF00528: BPD_transp_1" amino acids 94 to 251 (158 residues), 72 bits, see alignment E=2.8e-24

Best Hits

KEGG orthology group: K02050, sulfonate/nitrate/taurine transport system permease protein (inferred from 97% identity to bph:Bphy_3975)

Predicted SEED Role

"Urea carboxylase-related ABC transporter, permease protein" in subsystem Urea decomposition

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (271 amino acids)

>QEN71_RS15395 ABC transporter permease subunit (Paraburkholderia sabiae LMG 24235)
MRLINRHPGRTGSLMLLLLPFIVLVAVYFTGSSLRLQANPDDKLLPGATQMKDALHEYAF
TEDKRTGDYTMWDDTVSSMKRLGIGLVASAAIALVFGIVTGSIPLAGATLSPFITVISMI
PPLAVLPILFIVFGLDELSKVVLIVIGITPMMIRDLQQRTREIPEELWIKAQTLGASSWT
LIVRVIVPQLLPRLLIALRLALTSAWLFLIAAEAIASTDGLGYRIFLVRRYLAMDVILPY
VAWITLLAWLIDEALRRLTQWAFPWYNGGRA