Protein Info for QEN71_RS15380 in Paraburkholderia sabiae LMG 24235

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 435 transmembrane" amino acids 26 to 44 (19 residues), see Phobius details amino acids 50 to 74 (25 residues), see Phobius details amino acids 86 to 104 (19 residues), see Phobius details amino acids 112 to 138 (27 residues), see Phobius details amino acids 151 to 173 (23 residues), see Phobius details amino acids 187 to 208 (22 residues), see Phobius details amino acids 234 to 254 (21 residues), see Phobius details amino acids 274 to 296 (23 residues), see Phobius details amino acids 305 to 324 (20 residues), see Phobius details amino acids 332 to 357 (26 residues), see Phobius details amino acids 369 to 390 (22 residues), see Phobius details amino acids 397 to 418 (22 residues), see Phobius details PF00083: Sugar_tr" amino acids 15 to 409 (395 residues), 84.1 bits, see alignment E=1e-27 PF07690: MFS_1" amino acids 18 to 258 (241 residues), 67.1 bits, see alignment E=1.3e-22 amino acids 251 to 418 (168 residues), 38.6 bits, see alignment E=6.2e-14

Best Hits

KEGG orthology group: None (inferred from 88% identity to bcj:BCAL1223)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (435 amino acids)

>QEN71_RS15380 MFS transporter (Paraburkholderia sabiae LMG 24235)
MTQAISTRQPGRAATAAFIGTMIEWYDFYIYATAAALVFGELYFPSSDRFISTMASFATF
AVGFFARPLGGIVFGHLGDRIGRKKALMTTLMMMGVATVCVGLLPDYSKVGALAPVLLVL
LRVVQGIAVGGEWGGAVLMAGEHAPKGRRTFFASFAQLGSPAGLILSLIAFRAVTSMDKA
DFMSWGWRLPFLASAVLLIVGIVIRLGVNESPEFARMKEANRTSKLPIAEVFRSAWGLVL
LCIGANTIGIAGVYFTNTFMIAYTTQYVGVTRSLILDCLFAVAIIQFIAQPLAAWLAERI
GGARFLKIAALLAMISPYPMFVLVQSGSAVPMVIGIAIAVVCMASFYSVIAGFVSGIFPT
HVRYSGISLAYQVCGAVAGGLTPLVGTWLAHRYTGQWWPLAVFYTCLAGISLLCIVALDA
RRAAHAEQTEVVGAH