Protein Info for QEN71_RS15275 in Paraburkholderia sabiae LMG 24235

Annotation: TrkA C-terminal domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 530 transmembrane" amino acids 7 to 27 (21 residues), see Phobius details amino acids 33 to 52 (20 residues), see Phobius details amino acids 59 to 79 (21 residues), see Phobius details amino acids 95 to 115 (21 residues), see Phobius details amino acids 122 to 143 (22 residues), see Phobius details amino acids 150 to 173 (24 residues), see Phobius details amino acids 352 to 371 (20 residues), see Phobius details amino acids 377 to 395 (19 residues), see Phobius details amino acids 404 to 427 (24 residues), see Phobius details amino acids 444 to 469 (26 residues), see Phobius details amino acids 476 to 494 (19 residues), see Phobius details amino acids 505 to 528 (24 residues), see Phobius details PF06826: Asp-Al_Ex" amino acids 16 to 170 (155 residues), 90.6 bits, see alignment E=1.1e-29 amino acids 358 to 524 (167 residues), 109.1 bits, see alignment E=2.2e-35 PF02080: TrkA_C" amino acids 278 to 343 (66 residues), 43.3 bits, see alignment E=2.8e-15 TIGR01625: AspT/YidE/YbjL antiporter duplication domain" amino acids 362 to 511 (150 residues), 118.7 bits, see alignment E=9.6e-39

Best Hits

KEGG orthology group: K07085, putative transport protein (inferred from 94% identity to bph:Bphy_3956)

Predicted SEED Role

"Putative transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (530 amino acids)

>QEN71_RS15275 TrkA C-terminal domain-containing protein (Paraburkholderia sabiae LMG 24235)
MDAVRTLLETQPLLTLFLTVAVGYVIGECSIKGVALGSGAVLFVGLAIGGFAPKSAPPAL
LGTLGLLLFLYGIGVQYGGQFFAGLSSMDGLKANAAAVLGVLGAGFVSLALGPLFGVKLD
QALGLFAGAGTSTASLQAVLAVLKGEGAAVGYSVAYPFGVAGPILFLYLLNVALASRIEA
PPAHIIETAEIALRNQAFVGLTFPELKARLPASLGIVAVRRAHHNQLPADDFVMQTDDVL
LATAMDRDELRKAAELLGELQPGRMMRFREDLDYLRVFASSRIVVGRALSDIGFPEGMVC
TIAHVRRGDADMLPSPDLILEFGDRVGLLIGPGQREAVRKLFGDSIKGTAELSYISIGVG
AALGLLVGLIPLPIPGVGKLSLGLAALLLVALYLGKMRRFGGLVWTMPLSANLVLRNFGL
TVFLAQVGLSSGPKFFATIGLTGISFLLYGAAILIALVCITAACCLWLFRLPFDATVGVI
SGATGNPAILAFANRIAPTDRPDVGYAMIFPSMTIVKILFVEIAAVVVGG